Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,554,996 – 9,555,088 |
Length | 92 |
Max. P | 0.926701 |
Location | 9,554,996 – 9,555,088 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 74.10 |
Mean single sequence MFE | -24.57 |
Consensus MFE | -8.93 |
Energy contribution | -9.48 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.45 |
Structure conservation index | 0.36 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9554996 92 + 27905053 UAGGUCUUC-GAGACUCCAGUACACAGUACACUUCUUGUACCAUAAACUUGUGCACCUGCA--CAGCCAAUGAAUUGCGCAAGAUCUGAUCAAAC- (((((((((-(..(.((..(((((.((.......))))))).......((((((....)))--))).....)).)..)).)))))))).......- ( -20.20) >DroSec_CAF1 31646 91 + 1 UUGGUCUGC-GAGACUCCAGUACACU-UGUACUUCUUGUGCCAUAAACUUGUGCACCUGCA--CAGCCAAUGGAUUGCGCAAGAGCUGAUCAAAU- ((((((.((-........(((((...-.)))))((((((((.((....((((((....)))--))).......)).)))))))))).))))))..- ( -30.30) >DroSim_CAF1 31837 91 + 1 UAGGUCUGC-GAGACUCCAGUACACU-UGUACUUCUUGUGCCAUAAACUUGUGCACCUGCA--CAGCCAAUGGAUUGCGCAAGAGCUGAUCAAAC- ..((((.((-........(((((...-.)))))((((((((.((....((((((....)))--))).......)).)))))))))).))))....- ( -28.90) >DroEre_CAF1 33391 89 + 1 UAGGUCUUC-GGUACUCCAGUAC--U-UCCAAUUCGAUCCACUCAAACCUGUGCACCUGCA--CAGCCAAUAAAUUGCGCAAGAGCUGAUCAAAC- ..((.....-(((((....))))--)-.)).....((((..(((.....(((((....)))--))(((((....))).))..)))..))))....- ( -22.50) >DroYak_CAF1 32028 89 + 1 UCGGUCUUC-AGUACUCCAGUAC--U-UCCAUUUCGAUCCACUCAAACUAGUGCACCUGCA--CAGCCAAUAAAUUGCGCAAGAGCUGAUCAAAC- ..((.....-(((((....))))--)-.)).....((((..(((......((((....)))--).(((((....))).))..)))..))))....- ( -22.00) >DroAna_CAF1 41288 77 + 1 UGGUUCUGUGGAAACUCCAGCAAC--------------CC-----ACCUGGAGCAGGUGCAGCGAGCCAAUCAGUUGCGCAAGAGUUGAGCAAACA ..(((.(((...(((((..((...--------------..-----(((((...)))))(((((((.....)).)))))))..)))))..)))))). ( -23.50) >consensus UAGGUCUGC_GAGACUCCAGUACA_U_UCCACUUCUUGCCCCAUAAACUUGUGCACCUGCA__CAGCCAAUGAAUUGCGCAAGAGCUGAUCAAAC_ ..((((.......((....))..........................((((((((...((.....))........))))))))....))))..... ( -8.93 = -9.48 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:36 2006