Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,551,243 – 9,551,335 |
Length | 92 |
Max. P | 0.763698 |
Location | 9,551,243 – 9,551,335 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 82.39 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -20.36 |
Energy contribution | -21.45 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.09 |
Mean z-score | -2.01 |
Structure conservation index | 0.73 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9551243 92 + 27905053 UAUAGAAGUAUAUAGUACAUGGAUAAGUGCACUGCUGCAUUGGGAGGUUUCGGGUUGCAAUUAAUGCGCCUUGGUGGCAGUGAACUUGCCGA .......((((...)))).(((.(((((.((((((((((((((...((........))..)))))))((....))))))))).)))))))). ( -27.40) >DroSec_CAF1 27855 92 + 1 UAUAUAAGUAUAUAGUACAUGGAUAAGUGCACUGCUGCAUUGGGUCGUUUCGGGUUGCAAUGAAUGCGCCUGGGUGGCAGUGAACUUGCCGA .......((((...)))).(((.(((((.((((((..(.(..((.(((((((........)))).)))))..))..)))))).)))))))). ( -32.40) >DroSim_CAF1 28000 92 + 1 UAUAUAAGUAUAUAGUACAUGGAUAAGUGCACUGCUGCAUUGAGACGUUUCGGGUUGCAAUGAAUGCGCCUGGGUGGCAGUGAACUUGCCGA .......((((...)))).(((.(((((.((((((..(...........((((((.(((.....))))))))))..)))))).)))))))). ( -29.10) >DroEre_CAF1 29567 92 + 1 UAUAGAAGUAUAUAGUACAUGCAUAAGUGCACUGCUGCAUUGGGACGUUUCAGGUUGCAAUGAAUGCUCCUGGGUGGCAGUGAACUUGCCAA .......((((.......)))).(((((.((((((..(.(..(((.((((((........)))).)))))..))..)))))).))))).... ( -28.60) >DroYak_CAF1 28290 92 + 1 UAUAGAUGUAUAUAGUACAUGCAUAAGUGCACUGCUGCAUUGGGACGUUUCGGGUUGCAAUGAAUGCGCCUGGGUGGCAGUGAACUUGCCGA .....((((((...))))))(((..(((.((((((..(.(..((.(((((((........)))).)))))..))..)))))).))))))... ( -30.90) >DroAna_CAF1 37790 69 + 1 -----------------------UAAGUGCAGUGCCGAUCUGGGACGUUUCAGGUUGCAAUUGCUGCCCCAUUGUGGCAAUGAACUUGCCCC -----------------------(((((.((.(((((...(((((....)).(((.((....)).))))))...))))).)).))))).... ( -19.80) >consensus UAUAGAAGUAUAUAGUACAUGGAUAAGUGCACUGCUGCAUUGGGACGUUUCGGGUUGCAAUGAAUGCGCCUGGGUGGCAGUGAACUUGCCGA .......................(((((.(((((((((...........((((((.(((.....)))))))))))))))))).))))).... (-20.36 = -21.45 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:31 2006