Locus 3530

Sequence ID 3R_DroMel_CAF1
Location 9,545,667 – 9,545,759
Length 92
Max. P 0.792641
window5674

overview

Window 4

Location 9,545,667 – 9,545,759
Length 92
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 79.20
Mean single sequence MFE -27.82
Consensus MFE -18.42
Energy contribution -18.95
Covariance contribution 0.53
Combinations/Pair 1.15
Mean z-score -1.64
Structure conservation index 0.66
SVM decision value 0.59
SVM RNA-class probability 0.792641
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9545667 92 + 27905053
AUUAAUUUCGGUGUAGGAAAAGUGUCGCUCUCGUGCUCAUUGCUGAAGUGAUUAAGUGACUUCGCCUCGGCGGCUUUUCCGCCGA-UUUCGGC---
...............((((((((((((((....((((((....)).))))....))))))..(((....)))))))))))((((.-...))))--- ( -30.20)
>DroSec_CAF1 22447 92 + 1
AUUGAUUUCUGUGUAGGAAAAGUGUCGCGCUCGUGAUCAUUGCUGAAGUGAUAAAGUGUCUUCGCCUCGGCGGCUUUUCCGCCGU-UUUCGGC---
...............(((((((((((((....)))))...((((((.((((..........)))).))))))))))))))((((.-...))))--- ( -31.10)
>DroSim_CAF1 22530 92 + 1
AUUGAUUUCCGUGUAGGAAAAGUGUCGCGCUCGUGCUCAUUGCUAAAGUGAUAAAGUGACUUCGCCUCGGCGGCUUUUCCGCCGU-UUUCGGC---
...............(((((((((((((((....))(((((.....)))))....)))))..(((....)))))))))))((((.-...))))--- ( -31.50)
>DroEre_CAF1 22599 79 + 1
AUUGAUUUCUGUGUAGGAAAAGUGUCGCGCUC-------------AAGUGAUAAAGUGACUUCGCCUCUGUGGCUUUUCCGCCGA-UUUCGGC---
...............(((((((((((((....-------------..)))))...(((....))).......))))))))((((.-...))))--- ( -23.10)
>DroYak_CAF1 22625 92 + 1
AUUGAUUUCUGUGUAGGAAAAGUGUCGCGCUCGUGCUCAUUGCUGAAGUGAUAAAGUGACUUCGCCUCGGCGGCUUUUCCGCCGA-UUUCGGC---
...............(((((((((((((((....))(((((.....)))))....)))))..(((....)))))))))))((((.-...))))--- ( -32.10)
>DroAna_CAF1 32734 82 + 1
-----UCACAGUGUCGGAAAACUGUCGCU-------UAGUUGC--CAGUGAUAAAGUGACAUUGACUCUGUAGCAUUUCAACUCAUUUUUGGCUUC
-----..((((.(((((.....(((((((-------(.((((.--...)))).))))))))))))).))))......................... ( -18.90)
>consensus
AUUGAUUUCUGUGUAGGAAAAGUGUCGCGCUCGUGCUCAUUGCUGAAGUGAUAAAGUGACUUCGCCUCGGCGGCUUUUCCGCCGA_UUUCGGC___
...............(((((((((((((...........................)))))..(((....)))))))))))((((.....))))... (-18.42 = -18.95 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:29 2006