Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,545,106 – 9,545,197 |
Length | 91 |
Max. P | 0.785376 |
Location | 9,545,106 – 9,545,197 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -25.78 |
Consensus MFE | -17.91 |
Energy contribution | -18.69 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.19 |
Mean z-score | -2.69 |
Structure conservation index | 0.69 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9545106 91 + 27905053 AGCGAAACUCGAUUUUCCAUUCUCUACACUCGAGCGAAAAACGCCCACCACAAUUUAGAUUAGUUGGCG--CUGGGAAAUUGAGUGCUAAGCA .((...((((((((((((((((.((.......)).)))...((((.((..............)).))))--.))))))))))))).....)). ( -25.54) >DroSec_CAF1 21843 91 + 1 AGCGAAACUCGAUUUUCCAUUCUCUACACUCGAGCGAAAAACGCCCACCACAAUUUAGAUUAGUUGGCG--CUGGGAAAUUGAGCGCUAAGCA ((((...(((((((((((((((.((.......)).)))...((((.((..............)).))))--.))))))))))))))))..... ( -24.74) >DroSim_CAF1 21925 90 + 1 -GCGAAACUCGAUUUUCCAUUCUCUACACUCGAGCGAAAAACGCCCACUACAAUUUAGAUUAGUUGGCG--CUGGGAAAUUGAGUGCUAAGCA -((...((((((((((((((((.((.......)).)))...((((.((((..........)))).))))--.))))))))))))).....)). ( -28.30) >DroEre_CAF1 21991 90 + 1 AGCAAAACUCGAUUUUCCAUUCUCUACACUCGAG-GAAAAACGCCCACUACAAUUAGGAAAAGUUAGCG--CUGGGAAAUCGGGUGCUAAGCA .((...((((((((((((((((((.......)))-))....(((..(((............)))..)))--.))))))))))))).....)). ( -26.00) >DroYak_CAF1 22059 90 + 1 AGCAAAACUCGAUUUUCCAUUCUCUACACUCGGG-GAAAAACGCCCACUACAAUUAAGAUUAGUUGGCG--CUGGGAAAUUGGGUGCGAAGCA .((...(((((((((((((((((((......)))-)))...((((.((((..........)))).))))--.))))))))))))).....)). ( -30.30) >DroAna_CAF1 32342 87 + 1 AACAAAACUCCAAUUUCCAUUUACUACACA-GAGCGAAACACGCCCUCCUAAAUCGAGAUUAUAAGGGGCUUUGUGUAAUAGAGUGAU----- .................(((((..((((((-(((((.....).((((..(((.......)))..))))))))))))))...)))))..----- ( -19.80) >consensus AGCAAAACUCGAUUUUCCAUUCUCUACACUCGAGCGAAAAACGCCCACCACAAUUUAGAUUAGUUGGCG__CUGGGAAAUUGAGUGCUAAGCA .((...((((((((((((((((.((.......)).)))...((((.((..............)).))))...))))))))))))).....)). (-17.91 = -18.69 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:28 2006