Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,537,617 – 9,537,736 |
Length | 119 |
Max. P | 0.928645 |
Location | 9,537,617 – 9,537,736 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 84.59 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -18.54 |
Energy contribution | -19.10 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.60 |
Structure conservation index | 0.78 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9537617 119 + 27905053 UAUCAUUUUCGAAUACCCAUUUACUUAUUUUAAAGGUAGAUUUCGAAAUCUGUACAUUAAUUUUGAAAUGUUCUUUUAAAACUAUACGCUAAUAAAAAGCUAGGGAAAUGCCCAGAACC ...............(((.........(((((((((.(.((((((((((..........)))))))))).).)))))))))......(((.......)))..))).............. ( -19.80) >DroSec_CAF1 14602 119 + 1 UAUAACUUUCGAAAACACAUUAACCUUCUUUAAAGGUUGAUUUCGGAAUCUGUUCAUUCAUUUUCAAAAGUUCUUUUAAAACUUUAAGCUUUCAAAAAGCUCGGGAAAUUACCAGAUUC .........((((.....(((((((((.....)))))))))))))(((((((.......((((((.((((((.......)))))).(((((.....)))))..))))))...))))))) ( -23.00) >DroSim_CAF1 14742 119 + 1 UAUAAUUUUCGAAAACACAUUAACCUUCUUUAAAGGUUGAUUUCGAAAUCUGUUCAUUCAUUUUCAAAAGUUCUUUUAAAACUUUUAGCUAUUAAAUAGCUAGGGAAAUGGCCAGAAUA ......(((((((.....(((((((((.....))))))))))))))))((((..((((...(..((((((((.......)))))))((((((...)))))).)..)))))..))))... ( -28.90) >consensus UAUAAUUUUCGAAAACACAUUAACCUUCUUUAAAGGUUGAUUUCGAAAUCUGUUCAUUCAUUUUCAAAAGUUCUUUUAAAACUUUAAGCUAUUAAAAAGCUAGGGAAAUGACCAGAAUC ......(((((((.....(((((((((.....))))))))))))))))((((..((((........((((((.......))))))..((((.....))))......))))..))))... (-18.54 = -19.10 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:27 2006