Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,536,959 – 9,537,073 |
Length | 114 |
Max. P | 0.951683 |
Location | 9,536,959 – 9,537,073 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 76.49 |
Mean single sequence MFE | -41.90 |
Consensus MFE | -27.51 |
Energy contribution | -28.47 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.38 |
Mean z-score | -1.92 |
Structure conservation index | 0.66 |
SVM decision value | 1.41 |
SVM RNA-class probability | 0.951683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9536959 114 + 27905053 AUGCGUUCAUCUGGUUUCAGGCCAAAAUUCCCGAGAAUCAGCAACUUGGCAGUGGUGCCUUUGGGAGCCAUGCGCCUCAGGGCGGCCAGGUUGCUCAGAUCCAUGGCGAAGAUG .......((((((((.....))))...((((((.(.((((((((((((((.(((((.((....)).))))).((((....)))))))))))))))..))).).))).))))))) ( -46.20) >DroSec_CAF1 13936 114 + 1 AUGCGUUCAUCUGGUUUCAGGCCAAAAUUCCCCAAAAUCAGCAACUUGGCAGUGGCGCCUUUGGGAGCCAUGCGCCUCAGGGCGGCCAGGUUGCUGAGAUCCAUGCCGAAGAUG ..((((..(((((((.....)))).............(((((((((((((.(((((.((....)).))))).((((....))))))))))))))))))))..))))........ ( -49.30) >DroEre_CAF1 14311 114 + 1 AUGCGUUCAUCUGGCCUGAGACCGAAGUCCCCCAGGAGAAGCAACUUGGCAGUGGCGCCUUUGGGGGCCAUACGCCUCAGGGCGGCUAGGUUGCUCAGAUCCAUGCCGAAGAUA ..((((..(((((.((((.(((....)))...))))...(((((((((((.(((((.((....)).))))).((((....))))))))))))))))))))..))))........ ( -50.70) >DroWil_CAF1 13855 114 + 1 ACGCGGUUGUCCGGAUGCAAGCCAAAGUCACCCAACAGUAGCAGCUUGGCGGUGGCAUAUUGCGGCGCCAUCCGUUUCAGCGACUCCAUAUUAUUUGGAUCCAUGCCAAAAAUA ..(((((((..((((((...(((.....(((((...(((....)))..).))))((.....)))))..))))))...))))((.((((.......))))))..)))........ ( -32.60) >DroYak_CAF1 14228 114 + 1 AUGCGUUCAUCUGGUUUUAGGCCAAAAUCCCCAAGGAGAAGCAGCUUGGUAGUGGCGCCCUUGGGAGCCAUACGCCUUAGGGCGGCUAGGUUGCUCAGAUCCAUGCCGAAGAUG .......((((((((.....)))....((..((.(((..(((((((((((.(((((.((....)).))))).((((....)))))))))))))))....))).))..))))))) ( -44.80) >DroAna_CAF1 23623 114 + 1 AUACGUUCAUCCGGCUUCAGACCAAAAUCCCCCAACAGGAACAUCUUGGCCGUACUGUAACUUGGAGCUAUCCGCUUCAAGGCCGCCAAAUUGCUCCGAUCCAUGGCGAAGAUA ....((((....(((....).)).........(....)))))(((((.(((((.......((((((((.....))))))))...((......))........))))).))))). ( -27.80) >consensus AUGCGUUCAUCUGGUUUCAGGCCAAAAUCCCCCAAAAGAAGCAACUUGGCAGUGGCGCCUUUGGGAGCCAUACGCCUCAGGGCGGCCAGGUUGCUCAGAUCCAUGCCGAAGAUA ..((((..((((((.......))................(((((((((((.(((((.((....)).))))).((((....))))))))))))))).))))..))))........ (-27.51 = -28.47 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:26 2006