Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,520,688 – 9,520,802 |
Length | 114 |
Max. P | 0.505133 |
Location | 9,520,688 – 9,520,802 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.10 |
Mean single sequence MFE | -36.95 |
Consensus MFE | -23.52 |
Energy contribution | -26.05 |
Covariance contribution | 2.53 |
Combinations/Pair | 1.16 |
Mean z-score | -1.91 |
Structure conservation index | 0.64 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9520688 114 + 27905053 CAGGAGUACCUGCGCCAACAGCGUGACAAGAUUGUGGAGAUAAAGAAGCAGACGCGUGCAAAGCAACUGCAAGAGACCAUGUCCCGCGGUACUCCACAUGCACCGGAAGGAGCA ..((((((((.((((.....)))).........((((.((((.....((((..((.......))..))))..(....).))))))))))))))))...(((.((....)).))) ( -43.10) >DroSec_CAF1 7009 114 + 1 CAGGAGUACCUGCGCCAACAGCGUGACAAGAUUGUGGAGAUAAAGAAGCAGACGCGUGCAAAGCAACUGCAGGAGACCAUGUCCCGAGGUACUCCACAUGCACCGGAAGGAGCG ..(((((((((((((.....))))..........(((.((((.....((((..((.......))..)))).(....)..))))))))))))))))....((.((....)).)). ( -43.40) >DroEre_CAF1 7155 114 + 1 CAGGAGUACCUGCGCCAGCAGCGUGACAAGAUUGUGCAGAUAAAGAAGCAGACGCGUGCAAGGCAACUGCAAGAGACCAUGUCCCGAGGUACUCCACAUGCUCCGGAGGGAGCG ..(((((((((((....))..((.((((.(.((.(((((........((....)).(((...))).)))))...)).).)))).)))))))))))....(((((....))))). ( -42.70) >DroWil_CAF1 7270 111 + 1 CAGGAAUACUUGCGCCAACAGCGAGAUAAAAUUGUUGAAAUAAAGAAACAAACGCGUGCCAAACAGCUUCAGGAUACAAUGGCACGCACUAGUCCACCAGAUG---CAGGAGUU ........((((((.(..((((((.......))))))................((((((((.....(.....)......))))))))............).))---)))).... ( -26.50) >DroYak_CAF1 7014 114 + 1 CAGGAGUACCUGCGCCAGCAGCGUGACAAGAUUGUGCAGAUAAAGAAGCAGACGCGUGCAAAGCAACUACAAGAGACCAUGUCCCGAGGUACUCCACAUGCUCCGGAGGGAGCG ..(((((((((((....(((((((.(((....)))((..........))..)))).)))...))........(.(((...))).).)))))))))....(((((....))))). ( -37.20) >DroAna_CAF1 13707 114 + 1 CAGGAGUAUCUUCGCCAACAGCGCGACAAAAUAGUGGAAAUCAAGAAGCAAACACGGGCCAAGCAGUUGCAAGAGACCAUGUCCCGUGGCACGCCGCAUGCUCCAGAAGGAGCU ..((..(((..((((.....))(((((......(((................)))..((...)).)))))....))..)))..))((((....))))..(((((....))))). ( -28.79) >consensus CAGGAGUACCUGCGCCAACAGCGUGACAAGAUUGUGGAGAUAAAGAAGCAGACGCGUGCAAAGCAACUGCAAGAGACCAUGUCCCGAGGUACUCCACAUGCUCCGGAAGGAGCG ..((((((((.((((.....))))((((...((((....))))....((((..((.......))..)))).........))))....))))))))....(((((....))))). (-23.52 = -26.05 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:21 2006