Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,515,724 – 9,515,844 |
Length | 120 |
Max. P | 0.887907 |
Location | 9,515,724 – 9,515,844 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.22 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -25.05 |
Energy contribution | -24.30 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.31 |
Mean z-score | -2.32 |
Structure conservation index | 0.84 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887907 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9515724 120 + 27905053 GGAGCUGUUUGAGUUUAUAAAACUCGAGGAUAUCCGCACUCUGUGCGUUUACUUCGUGGAGAACUUCAGCAAGAUAUUUGAUGAAAUCGAAUACGUGCAGACAUUUAAGUACUUGAAGAA (((..(.((((((((.....)))))))).)..)))....(((.((((.......)))).))).((((((((...((((((((...))))))))..)))..((......))...))))).. ( -28.70) >DroVir_CAF1 7686 120 + 1 GGAGCUAUUUGAGUUUAUAAAACUCGAGGAUAUACGUACGCUGUGCGUAUACUUCGUGGAGAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAAACAUUUAAAUACCUAAAGAA ..((.(((((((((........(.(((((.(((((((((...)))))))))))))).)..........(((..(((((((((...))))))))).)))....))))))))).))...... ( -31.20) >DroGri_CAF1 6709 120 + 1 GGAAUUAUUUGAGUUUAUAAAACUCGAGGAUAUACGCACAUUGUGUGUAUACUUUGUGGAAAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAAACAUUUAAAUACCUAAAGAA ((...(((((((((........(.(((((.(((((((((...)))))))))))))).)..........(((..(((((((((...))))))))).)))....)))))))))))....... ( -28.40) >DroWil_CAF1 2079 120 + 1 GGAAUUAUUCGAGUUUAUAAAACUCGAAGAUAUACGCACAUUGUGCGUGUAUUUUGUAGAGAAUUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAGACAUUCAAAUAUUUGAAGAA .......((((((((.....))))))))(((((((((((...))))))))))).......((((.((.(((..(((((((((...))))))))).))).)).)))).............. ( -33.60) >DroMoj_CAF1 6936 120 + 1 GGAAUUAUUCGAGUUUAUAAAACUUGAAGAUAUACGCACGCUGUGCGUAUACUUCGUGGAGAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUACGUGCAAACAUUUAAAUACCUAAAGAA ((.....((((((((.....)))))((((.(((((((((...))))))))))))).....))).....(((...((((((((...))))))))..))).............))....... ( -28.00) >DroAna_CAF1 8935 120 + 1 GGAGCUGUUUGAGUUUAUAAAACUCGAGGACAUUCGCACCCUGUGCGUCUACUUUGUGGAGAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAGACAUUCAAGUACUUGAAGAA (((..(.((((((((.....)))))))).)..)))((((...))))((((.(((....))).......(((..(((((((((...))))))))).))))))).(((((....)))))... ( -28.90) >consensus GGAACUAUUUGAGUUUAUAAAACUCGAGGAUAUACGCACACUGUGCGUAUACUUCGUGGAGAACUUUAGCAAGAUAUUUGAUGAAAUCGAAUAUGUGCAAACAUUUAAAUACCUAAAGAA .....(((((((((........(((((((.(((((((((...)))))))))))))).)).........(((...((((((((...))))))))..)))....)))))))))......... (-25.05 = -24.30 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:20 2006