Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,513,361 – 9,513,478 |
Length | 117 |
Max. P | 0.681878 |
Location | 9,513,361 – 9,513,478 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -26.18 |
Consensus MFE | -26.42 |
Energy contribution | -25.74 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.12 |
Mean z-score | -1.14 |
Structure conservation index | 1.01 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9513361 117 - 27905053 AACCGUUCCUCUGGCUAGGGACUAUUGGCUAGGCUAUGCUACUUAGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUUUAUGCUUGACUUCUAUAUC ..((((((((......)))))).((((((((((........))))))))))........))...((((((.....))))))((((.(((((..........)).))).))))..... ( -25.80) >DroSec_CAF1 142957 117 - 1 AACCGUUCCUCUGGCUAGGGACUAUUGGCUAGGCUAUGCUACUUAGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC .........((.(((((((((...((((((.(((((.......)))))...........(((((((((((.....)))))..)))))))))))))))))).))).)).......... ( -28.10) >DroSim_CAF1 133157 117 - 1 AACCGUUCCUCUGGCUAGGGACUAUUGGCUAGGCUAUGCUACUUAGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC .........((.(((((((((...((((((.(((((.......)))))...........(((((((((((.....)))))..)))))))))))))))))).))).)).......... ( -28.10) >DroEre_CAF1 150931 117 - 1 AACCGUUCCUCUGGUUAGGGGCUAUUGGCUAGGCUAUGCUACUUGGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC ..((((((((......)))))).((((((((((........))))))))))........))...((((((.....))))))((((.(((((..........)).))).))))..... ( -25.00) >DroYak_CAF1 144725 117 - 1 AACCGUUCCUCUGGUUAGGGGCUAUUGGCUAGGCUAUGCUACUUGGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCUAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC .........((.(((((((((((((((((((((........))))))))))........(((((((((((.....))))..))))))))))....))))).))).)).......... ( -23.90) >consensus AACCGUUCCUCUGGCUAGGGACUAUUGGCUAGGCUAUGCUACUUAGCUAAUUUAAAUUAGGAUCUUGAAUUUAAAAUUCAAAGGAUUCGGCUAAUCUCUAUGCUUGACUUCUAUAUC .........((.(((((((((...((((((.(((((.......)))))...........(((((((((((.....)))))..)))))))))))))))))).))).)).......... (-26.42 = -25.74 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:18 2006