Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,510,839 – 9,511,199 |
Length | 360 |
Max. P | 0.996957 |
Location | 9,510,839 – 9,510,959 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.39 |
Mean single sequence MFE | -39.24 |
Consensus MFE | -32.96 |
Energy contribution | -32.96 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9510839 120 - 27905053 UGUUUUUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGCGCUCACACACUAAACCACUCGCACAACCGAAGGCGUGUGUGCAUGUAUGCAAUUUUUUGGGGUGGUAUUGGCGGUGAAG .((.((((((((((((....)))))))))))).))((....))((((.(.((((((((((((((((..((....))..))))).......(((....)))))))))).)))).))))).. ( -44.50) >DroSec_CAF1 140517 119 - 1 UGUU-UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGCGCUCACACACUAAACCUCUCGCACAACCGAAGGCGUGUGUGCAUGUAUGCAAUUUUUUGGGGUGGUAUUGGCGGUGAAG .(((-(((((((((((....)))))))))))).))((....))((((.(.(((((((.((((((((..((....))..))))).......(((....)))))).))).)))).))))).. ( -39.10) >DroSim_CAF1 130678 119 - 1 UGUU-UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGCGCUCACACACUAAACCUCUCGCACAACCGAAGGCGUGUGUGCAUGUAUGCAAUUUUUUGGGGUGGUAUUGGCGGUGAAG .(((-(((((((((((....)))))))))))).))((....))((((.(.(((((((.((((((((..((....))..))))).......(((....)))))).))).)))).))))).. ( -39.10) >DroEre_CAF1 148369 116 - 1 UCUU-UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGCGCUCACACACUAAAACAUUCGCACAACCGAAGGCGUGUGUGCAUGUAUGCAAUUUUUUGGGGUGGUAUUGGCGCAG--- ...(-(((((((((((....)))))))))))).......(((((.((.((((...((((.((((((..(....)..)))))).))))...(((....))).))))))...)))))..--- ( -38.60) >DroYak_CAF1 142125 119 - 1 UGUU-UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGCGCUCACACACUAAAACACUCGCACAACCGAAGGCGUGUGUGCAUGUAUGCAAUUUUUUGGGGUGGUAUUGGCGAAGGAA .(((-(((((((((((....)))))))))))).)).(((.((....(((.(((((((((.(((.(.......)))).))))(((....))).....))))).)))....)))))...... ( -34.90) >consensus UGUU_UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCGCGCUCACACACUAAACCACUCGCACAACCGAAGGCGUGUGUGCAUGUAUGCAAUUUUUUGGGGUGGUAUUGGCGGUGAAG ......(((((((((((.....((((((.......))))))...(((((((.....(..(((......)))..).))))))))))))))))))........................... (-32.96 = -32.96 + 0.00)
Location | 9,510,919 – 9,511,039 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.55 |
Mean single sequence MFE | -39.94 |
Consensus MFE | -32.89 |
Energy contribution | -33.13 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -2.72 |
Structure conservation index | 0.82 |
SVM decision value | 2.77 |
SVM RNA-class probability | 0.996957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9510919 120 - 27905053 UCUUCUUACUUUCGCCCCCAGCAAUGAAACGCCAUGAAUUGGGGGAGACGGAAUCUAACGAUUGCGAACGCGUCGUAUCUUGUUUUUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCG ...........((.(((((((..(((......)))...))))))).))((.((((....)))).))..((((.(((((.......(((((((((((....)))))))))))))))))))) ( -44.31) >DroSec_CAF1 140597 119 - 1 UCUUCUUACUUUCGUCUCCAGCAAUGAAACUCCAUGAAUUGGGGGAGACUGAAUCUAACGAUUGCGAACGCGUUGUAUCUUGUU-UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCG ..........((((((((((....))...(((((.....))))))))))..((((....))))..)))(((((.((((......-(((((((((((....)))))))))))))))))))) ( -37.40) >DroSim_CAF1 130758 119 - 1 UCUUCUUACUUUCGUCCCCAGCAAUGAAACGCCAUGAAUUGGGGGAGACGGAAUCUAACGAUUGCGAACGCGUUGUAUCUUGUU-UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCG ...........((..((((((..(((......)))...))))))..))((.((((....)))).))..(((((.((((......-(((((((((((....)))))))))))))))))))) ( -40.50) >DroEre_CAF1 148446 119 - 1 UCUUCUUACUUUCUUCCCCAGCAAUGAAAAGCAAGAAAUUUGGGGAGAAGGAAUCAAACGAUUGCGAACGCGUCGUAUCUUCUU-UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCG ..(((...((((((.(((((((........))((....)))))))))))))((((....))))..)))((((.(((((......-(((((((((((....)))))))))))))))))))) ( -38.90) >DroYak_CAF1 142205 119 - 1 UCUUCUUACUUUCUUUCCCAGCAUUGAAACGUAAAGAAUUGGGGGAGAAGGAAUCAAACGAGUGCGAACGCGUCGUAUCUUGUU-UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCG ........((((((..(((((..((........))...)))))..)))))).................((((.(((((......-(((((((((((....)))))))))))))))))))) ( -38.60) >consensus UCUUCUUACUUUCGUCCCCAGCAAUGAAACGCCAUGAAUUGGGGGAGACGGAAUCUAACGAUUGCGAACGCGUCGUAUCUUGUU_UUUGCAUGCAUGACAAUGUGUGCAGAAUACGCGCG ..(((......((.(((((((..(((......)))...))))))).)).(.((((....)))).))))((((.(((((.......(((((((((((....)))))))))))))))))))) (-32.89 = -33.13 + 0.24)
Location | 9,511,039 – 9,511,159 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.75 |
Mean single sequence MFE | -36.90 |
Consensus MFE | -27.56 |
Energy contribution | -29.16 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.12 |
Mean z-score | -1.59 |
Structure conservation index | 0.75 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521415 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9511039 120 - 27905053 CACGCAUGGGCGCGAACGCUGCAAGUGUCCGUGUGAAGAAGGAGAAGGCGAAGAGGUGGGAAUCCAAAAGCUAAGGAUGCAGGACUUCAUUAGGAAGUGGUUCGCAUAUCCCUUUCGUUA ..(((((((((((...........)))))))))))...........(((((((.((((.(((((.....((.......))...(((((.....)))))))))).))...)).))))))). ( -37.10) >DroSec_CAF1 140716 120 - 1 CACGCAUGGGCGCGAAAGCUGCAAGUGUCCGUGUGAAGAAGGAGCAGGCGAAGAGGUGGGAAGGCAAAAGCUAAGGAUGCAGGACUUCAUAAGGAAGUGGUUCGCAUAUCCCUUUCGUUA ..(((((((((((...........)))))))))))...........(((((((....((((.(((....)))....((((.(((((.(........).))))))))).))))))))))). ( -37.50) >DroSim_CAF1 130877 120 - 1 CACGCAUGGGCGCGAAAGCUGCAAGUGUCCGUGUGAAGAAGGAGCAGACGAAGAGGUGGGAAGGCAAAAGCUAAGGAUGCAGGACUUCAUAAGGAAGUGGUUCGCAUAUCCCUUUCGUUA ..(((((((((((...........)))))))))))...........(((((((....((((.(((....)))....((((.(((((.(........).))))))))).))))))))))). ( -38.00) >DroEre_CAF1 148565 120 - 1 CACCCAUGGGCGCGAAAGCUGCAAGUGUCCGUGAGAAAAAGGAGCAGGCGAAAAGGUGGGAAGGGAUAAGCUAAGGAUGCAGGACUCCAUAAGAAAGCGGUUCGCAUAUGCCUUUCGAUA (((((((((((((...........)))))))))..........(....).....))))((((((.(((.((...(((........)))....(((.....))))).))).)))))).... ( -32.70) >DroYak_CAF1 142324 120 - 1 GACACAUGGGCGCGAAAGCUGCAAGUGUCCGUGUGAAGAAGGAGCAGACGAAAAGUUUGGAAGGGAUAAGCUAAGGAUGCACCAUUUCACAAGGAAGCGGUUCGCAUAUCCCUUUCGAUA ..(((((((((((...........))))))))))).....................((((((((((((.((.......))(((.((((.....)))).))).....)))))))))))).. ( -39.20) >consensus CACGCAUGGGCGCGAAAGCUGCAAGUGUCCGUGUGAAGAAGGAGCAGGCGAAGAGGUGGGAAGGCAAAAGCUAAGGAUGCAGGACUUCAUAAGGAAGUGGUUCGCAUAUCCCUUUCGUUA ..(((((((((((...........)))))))))))...........(((((((....((((.(((....)))....((((.((((..(........)..)))))))).))))))))))). (-27.56 = -29.16 + 1.60)
Location | 9,511,079 – 9,511,199 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.75 |
Mean single sequence MFE | -42.19 |
Consensus MFE | -34.80 |
Energy contribution | -35.84 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.64 |
Structure conservation index | 0.82 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9511079 120 - 27905053 GGAGUCUCGCUGCUCUCUUCCUGUUCUUCGCACACAUACACACGCAUGGGCGCGAACGCUGCAAGUGUCCGUGUGAAGAAGGAGAAGGCGAAGAGGUGGGAAUCCAAAAGCUAAGGAUGC (((.(((((((..(((((((.(.((((((((((....((((..(((...(((....))))))..))))..)))))))))).).))))).))...))))))).)))............... ( -43.20) >DroSec_CAF1 140756 120 - 1 GGAGUCUCGCUGCUCUCUUCCUGUUCUUCGCACACAUACACACGCAUGGGCGCGAAAGCUGCAAGUGUCCGUGUGAAGAAGGAGCAGGCGAAGAGGUGGGAAGGCAAAAGCUAAGGAUGC ...((((..(..(.((((((((((((((..(((((..((((..((....))((....)).....))))..)))))....)))))))))..))))))..)..))))............... ( -43.90) >DroSim_CAF1 130917 120 - 1 GGAGUCUCGCUGCUCUCUUCCUGUUCUUCGCACACAUACACACGCAUGGGCGCGAAAGCUGCAAGUGUCCGUGUGAAGAAGGAGCAGACGAAGAGGUGGGAAGGCAAAAGCUAAGGAUGC ...((((..(..(.((((((((((((((..(((((..((((..((....))((....)).....))))..)))))....))))))))..)))))))..)..))))............... ( -43.50) >DroEre_CAF1 148605 120 - 1 GGAGUCUCGCUAUUCUCUUCCUGUUCUUCGCACACACACACACCCAUGGGCGCGAAAGCUGCAAGUGUCCGUGAGAAAAAGGAGCAGGCGAAAAGGUGGGAAGGGAUAAGCUAAGGAUGC ...((((.(((..((((((((..((.(((((............((((((((((...........))))))))).)............)))))..))..))))))))..)))...)))).. ( -38.25) >DroYak_CAF1 142364 120 - 1 GGAGUCUUGCUGCUCUCUUCCUGUUUUUCGCACACAUACAGACACAUGGGCGCGAAAGCUGCAAGUGUCCGUGUGAAGAAGGAGCAGACGAAAAGUUUGGAAGGGAUAAGCUAAGGAUGC ...((((((((..((((((((..((((((((...(((((.(((((.((.(.((....))).)).))))).)))))..(......).).)))))))...))))))))..)))..))))).. ( -42.10) >consensus GGAGUCUCGCUGCUCUCUUCCUGUUCUUCGCACACAUACACACGCAUGGGCGCGAAAGCUGCAAGUGUCCGUGUGAAGAAGGAGCAGGCGAAGAGGUGGGAAGGCAAAAGCUAAGGAUGC ...((((.(((....((((((..((((((((...........(((((((((((...........)))))))))))............))))))).)..))))))....)))...)))).. (-34.80 = -35.84 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:13 2006