Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,371,367 – 1,371,466 |
Length | 99 |
Max. P | 0.693986 |
Location | 1,371,367 – 1,371,466 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 83.67 |
Mean single sequence MFE | -14.61 |
Consensus MFE | -11.43 |
Energy contribution | -11.60 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.78 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.693986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1371367 99 - 27905053 AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAA---ACACUAU-CAAGAA-----------GGC-A-- .((((.(...........((((.....((((((.......))))))....((((....)))).))))...((((((......---)).))))-...).)-----------)))-.-- ( -16.90) >DroPse_CAF1 4513 93 - 1 AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAAUACACACUAA----------------------A-- ..(((....)))......((((.....((((((.......))))))....((((....)))).))))....((.(((.....))).))....----------------------.-- ( -12.30) >DroWil_CAF1 4813 93 - 1 AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACUAUACGUAAAAAUGGGUAAAUAA---GCG-------ACAA-----------AAU-A-- .(((((............((((.....((((((.......)))))).......(....)....))))............)))---)).-------....-----------...-.-- ( -12.25) >DroMoj_CAF1 4920 102 - 1 AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAA---ACUAUAAGCAACGA-----------ACU-ACA .(((((............((((.....((((((.......))))))....((((....)))).))))......(((......---))).))))).....-----------...-... ( -16.80) >DroAna_CAF1 4627 111 - 1 AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAA---ACAACUU-AAAACAUUCAAACCAAUGGCGA-- ...((((....((.....((((.....((((((.......))))))....((((....)))).))))....(((((......---...))))-)...........))....))))-- ( -17.10) >DroPer_CAF1 4514 93 - 1 AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAAUACACACUAA----------------------A-- ..(((....)))......((((.....((((((.......))))))....((((....)))).))))....((.(((.....))).))....----------------------.-- ( -12.30) >consensus AGCUUGCAAAAGGAUAAAUAUGGAAAGCCGAAGAAAUUAACUUUGGAACAAUUGGAAACAAUACGUAAAAAUGGGUAAAUAA___ACACUAA___A__A_______________A__ ..(((....)))......((((.....((((((.......))))))....((((....)))).)))).................................................. (-11.43 = -11.60 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:02 2006