Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,363,073 – 1,363,168 |
Length | 95 |
Max. P | 0.855274 |
Location | 1,363,073 – 1,363,168 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 74.16 |
Mean single sequence MFE | -21.95 |
Consensus MFE | -16.05 |
Energy contribution | -16.08 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.18 |
Mean z-score | -1.13 |
Structure conservation index | 0.73 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.855274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1363073 95 + 27905053 AC--------AUAUCUUUCUAACAUGGAUUCUUCCAAAACAGGUGACCCUCAAAAGCGUUCACAUAGUGAGCAUCAUGGGCAACAAGGGCACUCUGGAGAAGC ..--------.....(((((....((((....))))...((((((.((((.......((((((...))))))......(....).))))))).))).))))). ( -26.50) >DroVir_CAF1 6078 95 + 1 -ACUACACAAAUAACAUUACAA-------UAUGUCCGUGCAGGUGACUCUGAAGAGCGUUCAUAUCGUGAGCAUCAUGGGCAACAAGGGCACGCUGGAAAAGC -.....................-------..(((((.(((..(((((((....))).((((((...)))))).))))..)))....))))).(((.....))) ( -22.50) >DroGri_CAF1 6129 94 + 1 ACUUAUAUCAAUAU--GUAAAU-------UGUUUUUAUGCAGGUGACACUUAAGAGCGUUCAUAUUGUGAGCAUCAUGGGCAAUAAGGGCACGCUGGAGAAAC ..((((((....))--))))..-------.((((((...((((((...((((.....((((((..((....))..))))))..))))..))).))).)))))) ( -16.60) >DroSec_CAF1 7704 95 + 1 AC--------AUAUCUCUCUAACAUGGAUACUUUCAAAACAGGUGACCCUAAAAAGCGUUCACAUAGUGAGCAUAAUGGGCAACAAGGGCACUCUGGAGAAGC ..--------...((((.......((((....))))...((((((.((((.......((((((...))))))......(....).))))))).)))))))... ( -26.20) >DroSim_CAF1 5626 95 + 1 AC--------AUAUCUUUUUAACAUGGAUACUUUCAAAACAGGUGACCCUCAAAAGCGUUCACAUAGUGAGCAUCAUGGGCAACAAGGGCACUCUGGAGAAGC ..--------....((((((....((((....))))...((((((.((((.......((((((...))))))......(....).))))))).))))))))). ( -24.20) >DroYak_CAF1 9415 95 + 1 AG--------GAAUCUCGUUUAUUUUUAUACUUUCAAAAUAGGUGACCCUCAAAAGCGUUCACAUAGUGAGCAUUAUGGGCAACAAAGGCACUCUUGAAAAGC ..--------.....................((((((....((((.((.........((((((...))))))......(....)...)))))).))))))... ( -15.70) >consensus AC________AUAUCUUUAUAACAUGGAUACUUUCAAAACAGGUGACCCUCAAAAGCGUUCACAUAGUGAGCAUCAUGGGCAACAAGGGCACUCUGGAGAAGC .......................................((((((.((((.......((((((...))))))......(....).))))))).)))....... (-16.05 = -16.08 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:00 2006