Locus 351

Sequence ID 3R_DroMel_CAF1
Location 1,363,073 – 1,363,168
Length 95
Max. P 0.855274
window580

overview

Window 0

Location 1,363,073 – 1,363,168
Length 95
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 74.16
Mean single sequence MFE -21.95
Consensus MFE -16.05
Energy contribution -16.08
Covariance contribution 0.03
Combinations/Pair 1.18
Mean z-score -1.13
Structure conservation index 0.73
SVM decision value 0.80
SVM RNA-class probability 0.855274
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1363073 95 + 27905053
AC--------AUAUCUUUCUAACAUGGAUUCUUCCAAAACAGGUGACCCUCAAAAGCGUUCACAUAGUGAGCAUCAUGGGCAACAAGGGCACUCUGGAGAAGC
..--------.....(((((....((((....))))...((((((.((((.......((((((...))))))......(....).))))))).))).))))). ( -26.50)
>DroVir_CAF1 6078 95 + 1
-ACUACACAAAUAACAUUACAA-------UAUGUCCGUGCAGGUGACUCUGAAGAGCGUUCAUAUCGUGAGCAUCAUGGGCAACAAGGGCACGCUGGAAAAGC
-.....................-------..(((((.(((..(((((((....))).((((((...)))))).))))..)))....))))).(((.....))) ( -22.50)
>DroGri_CAF1 6129 94 + 1
ACUUAUAUCAAUAU--GUAAAU-------UGUUUUUAUGCAGGUGACACUUAAGAGCGUUCAUAUUGUGAGCAUCAUGGGCAAUAAGGGCACGCUGGAGAAAC
..((((((....))--))))..-------.((((((...((((((...((((.....((((((..((....))..))))))..))))..))).))).)))))) ( -16.60)
>DroSec_CAF1 7704 95 + 1
AC--------AUAUCUCUCUAACAUGGAUACUUUCAAAACAGGUGACCCUAAAAAGCGUUCACAUAGUGAGCAUAAUGGGCAACAAGGGCACUCUGGAGAAGC
..--------...((((.......((((....))))...((((((.((((.......((((((...))))))......(....).))))))).)))))))... ( -26.20)
>DroSim_CAF1 5626 95 + 1
AC--------AUAUCUUUUUAACAUGGAUACUUUCAAAACAGGUGACCCUCAAAAGCGUUCACAUAGUGAGCAUCAUGGGCAACAAGGGCACUCUGGAGAAGC
..--------....((((((....((((....))))...((((((.((((.......((((((...))))))......(....).))))))).))))))))). ( -24.20)
>DroYak_CAF1 9415 95 + 1
AG--------GAAUCUCGUUUAUUUUUAUACUUUCAAAAUAGGUGACCCUCAAAAGCGUUCACAUAGUGAGCAUUAUGGGCAACAAAGGCACUCUUGAAAAGC
..--------.....................((((((....((((.((.........((((((...))))))......(....)...)))))).))))))... ( -15.70)
>consensus
AC________AUAUCUUUAUAACAUGGAUACUUUCAAAACAGGUGACCCUCAAAAGCGUUCACAUAGUGAGCAUCAUGGGCAACAAGGGCACUCUGGAGAAGC
.......................................((((((.((((.......((((((...))))))......(....).))))))).)))....... (-16.05 = -16.08 +   0.03) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:00 2006