Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,481,162 – 9,481,273 |
Length | 111 |
Max. P | 0.727450 |
Location | 9,481,162 – 9,481,273 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 81.35 |
Mean single sequence MFE | -25.52 |
Consensus MFE | -21.08 |
Energy contribution | -20.97 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.11 |
Mean z-score | -1.51 |
Structure conservation index | 0.83 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9481162 111 - 27905053 UUUCAACUACCUUUAAGUAUGAUAUAGAUUAAAAUCUGAUGAUAACGCUGCUUGCUUUGAUUUUCAGCACCGCGCAAGCACUGGAUUCUUCAGACAUUGGUGGAGGUGAAG .......((((((((...(((.((.....))...(((((.((...((.(((((((..((.....))((...))))))))).))...)).))))))))...))))))))... ( -26.80) >DroSec_CAF1 110750 89 - 1 UUUUAACUACCU--AAGUA--------------------UGAUAACGCCGCUUGCUUUUAUUUUCAGCACCGCGCAAGCACUGGAUUCUCCAGACUUUGGUAGAGGUGAAG ......(((((.--((((.--------------------..........((((((..................)))))).((((.....)))))))).)))))........ ( -24.37) >DroSim_CAF1 100722 89 - 1 UUUCAACUACCU--AAGUA--------------------UGAUAACGCCGCUUGCUUUGAUUUUCAGCACCGCGCAAGCACUGGAUUCUCCAGACUUUGGUGGAGGUAAAG ......(((((.--((((.--------------------..........((((((..((.....))((...)))))))).((((.....)))))))).)))))........ ( -25.40) >consensus UUUCAACUACCU__AAGUA____________________UGAUAACGCCGCUUGCUUUGAUUUUCAGCACCGCGCAAGCACUGGAUUCUCCAGACUUUGGUGGAGGUGAAG ......(((((...((((...............................((((((..................)))))).((((.....)))))))).)))))........ (-21.08 = -20.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:51 2006