Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,473,138 – 9,473,228 |
Length | 90 |
Max. P | 0.564788 |
Location | 9,473,138 – 9,473,228 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 86.12 |
Mean single sequence MFE | -14.58 |
Consensus MFE | -12.09 |
Energy contribution | -11.37 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.41 |
Mean z-score | -1.65 |
Structure conservation index | 0.83 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9473138 90 + 27905053 CGCAGGAAGAUAACAAAGAAAAGUGCUACAAAAAGUGCCGAUUUUUCGGCAAACUUCAACCCAAAAGCAAUACAC-ACUGUGCAUUACAAA (((((((((...............(((......)))(((((....)))))...))))........(....)....-.)))))......... ( -16.10) >DroSec_CAF1 102690 89 + 1 CGCAGGAAGAUAACAAAGA-AAGUGCUACAAAAAGUGCCGAUU-UUCGGCAAACUUCAACCCAAAAGCAAUACAAAACUGUGCAUUACAAA (((((((((..........-....(((......)))((((...-..))))...))))........(....)......)))))......... ( -14.70) >DroSim_CAF1 92200 89 + 1 CGCAGGAAGAUAACAAAGA-AAGUGCUACAAAAAGUGCCGAUUUUUCGGCAAACUUCAACCCAAAAGCAAUACAC-ACUGUGCAUUACAAA (((((((((..........-....(((......)))(((((....)))))...))))........(....)....-.)))))......... ( -16.10) >DroEre_CAF1 110419 90 + 1 CGCAGGAAGAUAACAAAGAAAAGUGCUACGAAAAGUGCCGAUUCUUUGGCAAACUUCAACCCAAAAGCAAUACAU-ACUGUGCAUUACAAA (((((((((....(((((((..(..((......))..)...))))))).....))))........(....)....-.)))))......... ( -16.90) >DroYak_CAF1 104656 90 + 1 CGCAGGAAGAUAACAAAGAAAAGUGCUGCAAAAAGUGCCGAAUUUUCGGCAAACUUCAACCCAAAAGCAAUACAC-ACUGUGCAUUACAAA (((((((((...............(((......)))(((((....)))))...))))........(....)....-.)))))......... ( -16.20) >DroAna_CAF1 98408 76 + 1 ---------AUACCACC-AUAAGUGCAACAAA--GU--UAAAAAUUUGGCGAAUUUCAACCCAUAAGCAAUACAC-ACUGUGCAUUACAAC ---------........-...((((((.((((--..--......))))((................)).......-....))))))..... ( -7.49) >consensus CGCAGGAAGAUAACAAAGAAAAGUGCUACAAAAAGUGCCGAUUUUUCGGCAAACUUCAACCCAAAAGCAAUACAC_ACUGUGCAUUACAAA .....................(((((.(((.....((((((....))))))..(((........)))...........))))))))..... (-12.09 = -11.37 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:46 2006