Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,456,024 – 9,456,121 |
Length | 97 |
Max. P | 0.698640 |
Location | 9,456,024 – 9,456,121 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.41 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -15.88 |
Energy contribution | -17.02 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.12 |
Mean z-score | -2.04 |
Structure conservation index | 0.67 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9456024 97 + 27905053 CAGCUCCGGCAGCUCAAAAGCCCGUGGCUUCAAUGGCUGAGUAAAUCAAAAAUGUGCAAUAAAAAUUGCAAUAAAGCACGCUUCAAAGGUAACGCAG--- ..((.((..(((((...(((((...)))))....)))))...............((((((....)))))).................))....))..--- ( -19.20) >DroVir_CAF1 127674 86 + 1 --G--CGGCCAGAUCCAAAGCAAAUAGCU-----CGCUGUGUAAAUCAAAAAUGUGCAAUAAAACUUGCUGUGUGGCAUGCAGCAAAGGUAAAUG----- --.--..(((........(((.....)))-----.(((((((...(((...(((.((((......))))))).))).)))))))...))).....----- ( -16.50) >DroSec_CAF1 85659 94 + 1 --GCUCAGCCAGCUCAAAAGCCCGUGGCUCCAAUGGCUGAGUAAAUCAA-AAUGUGCAAUAAAAAUUGCAAUAAAGCACGCUUUACAGGUAGCGCAG--- --(((((((((.......((((...))))....))))))))).......-..(((((.........(((......))).(((.....))).))))).--- ( -28.10) >DroSim_CAF1 74928 95 + 1 --GCUCAGCCAGCUCAAAAGCCCGUGGCUCCAAUGGCUGAGUAAAUCAAAAAUGUGCAAUAAAAAUUGCAAUAAAGCACGCUUCACAGGUAGCGCAG--- --(((((((((.......((((...))))....)))))))))..........(((((.........(((......))).(((.....))).))))).--- ( -28.10) >DroEre_CAF1 93415 98 + 1 --GCUCAGCCAGCUCAAAAACCCGUGGCUCCAAUGGCUGAGUAAAUCAAAAAUGUGCAAUAAAAAUUGCAAUAAAGCACGCUUCAAAGGUAGCAAAUGCC --(((((((((((.((........)))).....)))))))))............((((((....)))))).....(((.(((........)))...))). ( -24.20) >DroYak_CAF1 87730 95 + 1 --GCUUAGCCAACUCAAAAGCCCGUGGCUCCAAUGGCUGAGUGAAUCAAAAAUGUGCAAUAAAAAUUGCAAUAAAGCACGCUUCGAAGGUAGCAAAG--- --(((((((((.......((((...))))....)))))))))............((((((....)))))).........(((.(....).)))....--- ( -25.50) >consensus __GCUCAGCCAGCUCAAAAGCCCGUGGCUCCAAUGGCUGAGUAAAUCAAAAAUGUGCAAUAAAAAUUGCAAUAAAGCACGCUUCAAAGGUAGCGCAG___ ..(((((((((.......(((.....)))....)))))))))..(((.......((((((....))))))...(((....)))....))).......... (-15.88 = -17.02 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:45 2006