Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,455,231 – 9,455,341 |
Length | 110 |
Max. P | 0.867617 |
Location | 9,455,231 – 9,455,341 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 80.50 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -22.19 |
Energy contribution | -21.97 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.10 |
Mean z-score | -2.01 |
Structure conservation index | 0.70 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.867617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9455231 110 + 27905053 GCGCCGCCUUUCGCGCAUUUGCAUGCAAUAAAGAUGGCGGGGCGAUAACUAGGUUGCCUGCCAUUGUUUGCCUUUU-CCCCAUAUUUCU--CUUU-----GGGCAUAUGUAUACGUGU ((((........))))...(((((((((....(((((((((.((((......)))))))))))))..)))).....-.((((.......--...)-----)))...)))))....... ( -34.50) >DroPse_CAF1 86739 97 + 1 GCGCCGUCUCUCGCACAUUUGCAUGCAAUAAAGAUGGCG-GGCGAUAACUAGGUUGCCUGCCAUUGUUUGCCUUUU-UCCCAUAUUUCU--GCUU-----AA------------CUCU ((..........(((....)))..((((....(((((((-((((((......)))))))))))))..)))).....-............--))..-----..------------.... ( -29.10) >DroSec_CAF1 84820 110 + 1 GCGCCGCCUUUCGCGCAUUUGCAUGCAAUAAAGAUGGCGGGGCGAUAACUAGGUUGCCUGCCAUUGUUUGCCUUUU-CCCCAUAUUUCU--CUUU-----GGGCAUAUGUGUUUGUGA ....(((.....((((((.(((..((((....(((((((((.((((......)))))))))))))..)))).....-..(((.......--...)-----))))).))))))..))). ( -34.70) >DroWil_CAF1 93120 108 + 1 --------UUUCGCACAUUUGCAUGCAAUAAAGAUGGCGGAGCGAUAACUAGGUUGCCUGCUAUUGUUUGCCUUUUUACCCAUAUUUCU--GUUCUCCAAGUGCAUGAGUGUGUGUUU --------...(((((((((((((((((....((((((((.(((((......)))))))))))))..)))).........((......)--)........)))))..))))))))... ( -31.20) >DroAna_CAF1 79678 112 + 1 GCGCCGCCUUUCGCGCAUUUGCAUGCAAUAAAGAUGGCGGGGCGAUAACUAGGUUGCCUGCCAUUGUUUGCCUUUU-CCCCAUAUUUCUGACUGU-----GCGCGUUAAUAUAUGUGU ((((.......(((((((...((.((((....(((((((((.((((......)))))))))))))..)))).....-...........))...))-----))))).........)))) ( -32.82) >DroPer_CAF1 88463 97 + 1 GCGCCGUCUCUCGCACAUUUGCAUGCAAUAAAGAUGGCG-GGCGAUAACUAGGUUGCCUGCCAUUGUUUGCCUUUU-UCCCAUAUUUCU--GCUU-----AA------------CUCU ((..........(((....)))..((((....(((((((-((((((......)))))))))))))..)))).....-............--))..-----..------------.... ( -29.10) >consensus GCGCCGCCUUUCGCACAUUUGCAUGCAAUAAAGAUGGCGGGGCGAUAACUAGGUUGCCUGCCAUUGUUUGCCUUUU_CCCCAUAUUUCU__CUUU_____GAGCAU__GU_U_UGUGU ............(((....)))..((((....(((((((.((((((......)))))))))))))..))))............................................... (-22.19 = -21.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:44 2006