Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,453,399 – 9,453,498 |
Length | 99 |
Max. P | 0.961182 |
Location | 9,453,399 – 9,453,498 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.97 |
Mean single sequence MFE | -25.99 |
Consensus MFE | -16.54 |
Energy contribution | -16.86 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.06 |
Mean z-score | -2.60 |
Structure conservation index | 0.64 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961182 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9453399 99 - 27905053 AAAGUAAUCUGGAAAUGCAUCUGGCAAAAUGCAUUCGAUUUCAUUUCGAUGCCAGUCCAGC---------------------UACCAAAUACUAAUCAUGGAAUCGCCAGAAUAUUUCUA .........((((((((..((((((.....((((.(((.......)))))))...((((..---------------------................))))...)))))).)))))))) ( -24.37) >DroSec_CAF1 83008 99 - 1 AAAGUAAUCUGGAAAUGCAUUUGGCAAAAUGCAUUCGAUUUCAUUUCGAUGCCAGUCCAGC---------------------UAACAAAUACUAAUCAUGGAAUCGCCAGAAUAUUUCUA .(((((.(((((.(((((((((....)))))))))(((((((((...(((...(((.....---------------------........))).))))))))))))))))).)))))... ( -24.82) >DroSim_CAF1 72332 99 - 1 AAAGUAAUCUGGAAAUGCAUCUGGCAAAAUGCAUUCGAUUUCAUUUCGAUGCCAGUCCAGC---------------------UAACAAAUACUAAUCAUGGAAUCGCCAGAAUAUUUCUA .........((((((((..((((((.....((((.(((.......)))))))...((((..---------------------................))))...)))))).)))))))) ( -24.37) >DroEre_CAF1 90691 120 - 1 AAAGUAAUCUGAAAAUGCAUCUGGCAAAAUGCAUUCGAUUUCAUUCCGAUGAAAGUUCAGCUCUGCCCAGCAUUCUGAACGCUAGCAAAUACUAAUCGGGGAAUCACUAGAAUAUUUCUA .(((((.((((..(((((((........))))))).((((((...(((((....((((((...(((...)))..))))))..(((......))))))))))))))..)))).)))))... ( -27.90) >DroYak_CAF1 85265 120 - 1 AAAGUAAUCUGGAAAUGCAGCUGGAAAAAUGCAUUCGAUUUCAUUUCGAUGAAAGUUCAGCUCUGCCCAGCAUUCUGAACGCUACCAAAUACUAAUCGGGGAAUCUCUAGAAUAUUUUUG ((((((.((((((((((((..(....)..)))))).((((((...(((((....((((((...(((...)))..))))))..............))))))))))))))))).)))))).. ( -28.47) >consensus AAAGUAAUCUGGAAAUGCAUCUGGCAAAAUGCAUUCGAUUUCAUUUCGAUGCCAGUCCAGC_____________________UAACAAAUACUAAUCAUGGAAUCGCCAGAAUAUUUCUA .(((((.(((((.(((((((........))))))).((((((((...(((...(((..................................))).))))))))))).))))).)))))... (-16.54 = -16.86 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:40 2006