Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,451,467 – 9,451,586 |
Length | 119 |
Max. P | 0.623294 |
Location | 9,451,467 – 9,451,586 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.05 |
Mean single sequence MFE | -23.89 |
Consensus MFE | -17.89 |
Energy contribution | -19.70 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.03 |
Mean z-score | -1.96 |
Structure conservation index | 0.75 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9451467 119 - 27905053 UUCUUUCUGUGUAUGCAAUUGGUUGUCAAAUAAUACUU-UUGACAUCCGGCAAUAAUAAAAACUUAUUUCAAAGUUUGUGAAUUUGUCAAAUAAUUGGUUGAACACAUUUCAUUUACUUA .......(((((...((((..(((((((((.......)-)))))....(((((......((((((......))))))......)))))....)))..)))).)))))............. ( -26.10) >DroSec_CAF1 81154 119 - 1 UUCUUUCUGUGUGUGCAAUUGGUUGUCAAAUAAUACUU-UUGACAUCCGGCAAUAAUAAAAACUUAUUUCAAAGUUUGCGAAUUUGUCAAAUAAAUGGUUGAACACAUUUCAUUUACUUA ........((((((.(((((((.(((((((.......)-)))))).))(((((......((((((......))))))......)))))........))))).))))))............ ( -28.00) >DroSim_CAF1 70474 119 - 1 UUCUUUCUGUGUGUACAAUUGGUUGUCAAAUAAUACUU-UUGACAUCCGGCAAUAAUAAAAACUUAAUUCAAAGUUUGUGAAUUUGUCAAAUAAAUGGUUGAACACAUUUCAUUUACUUA ........((((((.(((((((.(((((((.......)-)))))).))(((((......((((((......))))))......)))))........))))).))))))............ ( -28.00) >DroYak_CAF1 83440 119 - 1 UU-UUUCUGUGUGUGCAACUGGUUUCCAAACACUACUUUUUGACAUCCGGCCAUAAUAAAAACUAUUUUCAAAGUUUGUGAAUUUGUCAAAUAAAUGGGUAAACAAAUUUCAAUUACUUA ..-...(((..(((.(((..(((...........)))..))))))..))).....................((((...(((((((((...............))))).))))...)))). ( -13.46) >consensus UUCUUUCUGUGUGUGCAAUUGGUUGUCAAAUAAUACUU_UUGACAUCCGGCAAUAAUAAAAACUUAUUUCAAAGUUUGUGAAUUUGUCAAAUAAAUGGUUGAACACAUUUCAUUUACUUA ........((((((.(((((((.((((((..........)))))).))(((((......((((((......))))))......)))))........))))).))))))............ (-17.89 = -19.70 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:39 2006