Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 281,324 – 281,437 |
Length | 113 |
Max. P | 0.650773 |
Location | 281,324 – 281,437 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.27 |
Mean single sequence MFE | -35.10 |
Consensus MFE | -25.98 |
Energy contribution | -27.10 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.11 |
Mean z-score | -1.66 |
Structure conservation index | 0.74 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 281324 113 + 27905053 ACUACAGUUGCUUUGCUGUGUCAACGCAGUAGCCACCGCUGGCAUUUUAUUUACGAAACUUA-------UUAAUCGAUUUAUAUGCGCCGGCGUGCCAGUAGGCGAAGCGACCCAGGCCA ......((((((((((((((....)))))).(((...((((((((........(((......-------....)))........((....)))))))))).)))))))))))........ ( -35.50) >DroSec_CAF1 16558 110 + 1 ACUACAGUUGCUCUGCUGUGGCAACG---UAGCCACCACUGGCAUUUCAUUUACGAAACUUA-------UUAAUCGAUUUAUAUGCGCCACAGUGCCAGUAGGCGAAGCGACCCAGGCCA ......(((((((.((((((((..((---((((((....)))).((((......))))....-------............)))).))))))))(((....)))).))))))........ ( -33.00) >DroSim_CAF1 17854 113 + 1 ACUACAGUUGCUCUGCUGUGGCAACGCAGUAGCCACCACUGGCAUUUCAUUUACGAAACUUA-------UUAAUCGAUUUAUAUGCGCCAGAGUGCCAGUAGGCGAAGCGACCCAGGCCA ......((((((((((((((....)))))))).(.(((((((((((((((.(((((......-------....)))...)).))).....)))))))))).)).).))))))........ ( -35.50) >DroEre_CAF1 19284 120 + 1 UUUUCAGCUGCUUGGCUGUGGCCACGCAGUAGCCACCGCUGGCAUUUCAUUUACGAAACUUACGACUUAUUAAUCGAUUUAUAUGCGCCGGCGCACCAGUAGGCGAACCGACCCAGGCCA ..(((.(((((.((((....)))).))))).((((((((((((.((((......))))....(((........)))..........))))))).....)).))))))((......))... ( -36.40) >consensus ACUACAGUUGCUCUGCUGUGGCAACGCAGUAGCCACCACUGGCAUUUCAUUUACGAAACUUA_______UUAAUCGAUUUAUAUGCGCCAGAGUGCCAGUAGGCGAAGCGACCCAGGCCA ......((((((((((((((((.........))))).((((((.((((......))))..........................((......)))))))).)))))))))))........ (-25.98 = -27.10 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:55 2006