Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,445,442 – 9,445,541 |
Length | 99 |
Max. P | 0.696005 |
Location | 9,445,442 – 9,445,541 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 93.93 |
Mean single sequence MFE | -29.61 |
Consensus MFE | -24.14 |
Energy contribution | -25.18 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.10 |
Mean z-score | -1.52 |
Structure conservation index | 0.82 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9445442 99 + 27905053 UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCGACCCAGAGGGACGCAAAUCGGUUGGGGGCGAAACGGUUGGUUUGGCCGCA ...(((((((((.......((((((((...((((((........))))))....))))))))....)))))))))(((.((((.....)))).)))... ( -31.60) >DroSec_CAF1 75060 99 + 1 UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCAACGCAGAGGGACGCAAAUAGGUUGGGGGCAAAUCGGUUGGUUUGUCCGCA ............((((((.(((((((((..((((((........))))))..).))))))))....))))))(.(((((((((....))))))))).). ( -33.30) >DroSim_CAF1 64385 99 + 1 UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCAACGCAGAGGGAAGCAAAUCGGUUGGGGGCAAAUCGGUUGGUUUGUCCGCA ......((((((.........(((((((..((((((........))))))..).))))))......))))))(.(((((((((....))))))))).). ( -28.06) >DroEre_CAF1 83246 98 + 1 UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCGAC-CAGAGGGACGCAAAUCGGUUUGGGGCACAUCGGUUGGAUUGGCCGCA ...........(((((...((((((((...((((((........)))))).-..))))))))......)))))(.(((..(((.....)))..))).). ( -26.70) >DroYak_CAF1 77533 98 + 1 UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACUAGCGAC-CAGAGGGACGCAAAUCGGUUUGGGGCAAAUCGGUUGGUUUGCUCGCA ...........(((((...((((((((...(((((..........))))).-..))))))))......))))).(((((((((....)))))))))... ( -28.40) >consensus UUACUUAAUUGGAACUUAAUGUCCCUCGAAUUGUUUACAAACACGAGCGAC_CAGAGGGACGCAAAUCGGUUGGGGGCAAAUCGGUUGGUUUGGCCGCA ...(((((((((.......((((((((...((((((........))))))....))))))))....)))))))))((((((((....)))))).))... (-24.14 = -25.18 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:36 2006