Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,438,722 – 9,438,815 |
Length | 93 |
Max. P | 0.550758 |
Location | 9,438,722 – 9,438,815 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.25 |
Mean single sequence MFE | -20.78 |
Consensus MFE | -10.91 |
Energy contribution | -10.67 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.32 |
Mean z-score | -1.90 |
Structure conservation index | 0.53 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9438722 93 - 27905053 AA-AAUGUGCUAACCACUGAGCAAGCUAAUAACCGAAAUGAGUCAGUGCGUUGGCCAA-----------------AAAUGAAACCGACAACAUUGAUGACAUUUGAAUAAC .(-(((((((((((((((((.((..(........)...))..)))))).))))))((.-----------------.((((..........))))..))))))))....... ( -19.40) >DroSec_CAF1 68350 93 - 1 AA-AAUGUGCUAACCACUGAGCAAGCUAAUAACCGAUAUGAGUCAGUGGGUUGGCCAA-----------------AAACGAAACCGACAACAUUGAUGACAUUUAAAUAAC .(-(((((((((((((((((.((..(........)...))..))))).)))))))...-----------------...((....))............))))))....... ( -18.80) >DroSim_CAF1 56506 93 - 1 AA-AAUGUGUUAACCACUGAGCAAGCUAAUAACCGAUAUGAGUCAGUGGGUUGGCCAA-----------------AAACGAAACCGACAACAUUGAUGACAUUUAAAUAAC .(-(((((((((((((((((.((..(........)...))..)))))))(((((....-----------------........)))))....))))).))))))....... ( -19.90) >DroEre_CAF1 76637 92 - 1 AA-GAUGUGCUAACCACUGAGCAUGCUAAUAAGCGAAGUGAGUCAGUGCCUUGGUCAA------------------AAUGAAAUCGACAAUACUGAUGACAUUUAAAUAAU .(-(((((......((((..((..........))..)))).(((((((.....(((..------------------.........)))..))))))).))))))....... ( -17.90) >DroYak_CAF1 70627 92 - 1 AA-AAUGUGCUAACCACUGAGUAUGCUAAUAGCCGCAAUGAGUCAGUGCGUUGGUCAA------------------AAUGAAAUCGACAAUAUUGAUGACAUUUAAAUAAC ..-..((.((((((((((((.(.(((........)))...).)))))).))))))))(------------------((((..(((((.....)))))..)))))....... ( -23.30) >DroPer_CAF1 68219 109 - 1 AAGCAUGUGCUAGCCACUGAAUAACCCAAUAACCGGGAUGAGUCAGAGCC--AGUCCAAAUGUAAACGGAAUCGAAUACGAAAACGAAAACAGCGCUGGCAUUUGAAUAAC ...((.((((((((..((((....(((.......))).....)))).((.--..(((..........))).(((....)))...........)))))))))).))...... ( -25.40) >consensus AA_AAUGUGCUAACCACUGAGCAAGCUAAUAACCGAAAUGAGUCAGUGCGUUGGCCAA_________________AAACGAAACCGACAACAUUGAUGACAUUUAAAUAAC ...(((((((((((((((((.((..(........)...))..)))))).)))))).......................((....))............)))))........ (-10.91 = -10.67 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:31 2006