Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,438,007 – 9,438,109 |
Length | 102 |
Max. P | 0.999248 |
Location | 9,438,007 – 9,438,109 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -41.73 |
Consensus MFE | -34.37 |
Energy contribution | -35.28 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.12 |
Mean z-score | -3.47 |
Structure conservation index | 0.82 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9438007 102 + 27905053 AGAAGUUGCGCCGCCACAGGAUCAUAUGUGGCUGCUGA---UGAGCCGGCGACCAGGAGAAUGGUCGCCAGGGCAAGGCAAACAAAUGUGCGCAUUUUCGAGGAA .((((.((((((((((((........))))))((((..---((..((((((((((......)))))))).)).)).)))).......).))))).))))...... ( -45.60) >DroSec_CAF1 67635 102 + 1 AGAAGUUGCGCCGCCACAGGAUCAUAUGUGGCUGCUGA---UGAGCCGGCGACUAGGAGAAUGGUCGCCAGGGCAAGGCAAACAAAUGUGCGCAUUUUCGAGGAA .((((.((((((((((((........))))))((((..---((..((((((((((......)))))))).)).)).)))).......).))))).))))...... ( -43.30) >DroSim_CAF1 55792 102 + 1 AGAAGUUGCGCCGCCACAGGAUCAUAUGUGGCUGCUGA---UGAGCCGGCGACCAGGAGAAUGGUCGCCAGGGCAAGGCAAACAAAUGUGCGCAUUUUCGAGGAA .((((.((((((((((((........))))))((((..---((..((((((((((......)))))))).)).)).)))).......).))))).))))...... ( -45.60) >DroEre_CAF1 75929 102 + 1 AGAAGUUGCGCCGCCACAGGAUCAUAUGUGGCAGCUGA---GGAGCCGGCGACCAGGAGGAUGGUCGCCAAGACAAGGCAAACAAAUGUGCGCAUAUUCGUGAAA .(((..((((((((((((........)))))).(((..---(.....((((((((......))))))))....)..)))........).)))))..)))...... ( -40.90) >DroYak_CAF1 69913 102 + 1 AGAAGUUGCGCCGCCACAGGAUCAUAUGUGGCUGCUGA---GGAGCCGGCGACCAGGAGGAUGGUCGCCAGGGCGAGGCAAACAAAUGUGCGCAUAUUCGAGAAA .(((..((((((((((((........))))))((((..---...(((((((((((......))))))))..)))..)))).......).)))))..)))...... ( -45.50) >DroAna_CAF1 63964 101 + 1 AGGAGUUGAGCGGCC---GGAUCGAAUGUAGCCGCCGAAGUUGAGCUGGCGACCAGGAGGACGGCCGCCAGGGCAAGACAAACGAAUGUGCGCAU-UUCAGGAAA .(((((((.((((((---(..((...((..(((((((....)).)).)))...)).))...)))))))))(.(((...(....)....))).)))-)))...... ( -29.50) >consensus AGAAGUUGCGCCGCCACAGGAUCAUAUGUGGCUGCUGA___UGAGCCGGCGACCAGGAGAAUGGUCGCCAGGGCAAGGCAAACAAAUGUGCGCAUUUUCGAGAAA .(((..(((((.((((((........))))))............(((((((((((......))))))))..)))...............)))))..)))...... (-34.37 = -35.28 + 0.92)
Location | 9,438,007 – 9,438,109 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -38.89 |
Consensus MFE | -34.92 |
Energy contribution | -35.37 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.23 |
Mean z-score | -4.07 |
Structure conservation index | 0.90 |
SVM decision value | 3.46 |
SVM RNA-class probability | 0.999248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9438007 102 - 27905053 UUCCUCGAAAAUGCGCACAUUUGUUUGCCUUGCCCUGGCGACCAUUCUCCUGGUCGCCGGCUCA---UCAGCAGCCACAUAUGAUCCUGUGGCGGCGCAACUUCU ......(((..(((((.........(((..((..((((((((((......))))))))))..))---...)))((((((........)))))).)))))..))). ( -42.60) >DroSec_CAF1 67635 102 - 1 UUCCUCGAAAAUGCGCACAUUUGUUUGCCUUGCCCUGGCGACCAUUCUCCUAGUCGCCGGCUCA---UCAGCAGCCACAUAUGAUCCUGUGGCGGCGCAACUUCU ......(((..(((((.........(((..((..((((((((..........))))))))..))---...)))((((((........)))))).)))))..))). ( -36.80) >DroSim_CAF1 55792 102 - 1 UUCCUCGAAAAUGCGCACAUUUGUUUGCCUUGCCCUGGCGACCAUUCUCCUGGUCGCCGGCUCA---UCAGCAGCCACAUAUGAUCCUGUGGCGGCGCAACUUCU ......(((..(((((.........(((..((..((((((((((......))))))))))..))---...)))((((((........)))))).)))))..))). ( -42.60) >DroEre_CAF1 75929 102 - 1 UUUCACGAAUAUGCGCACAUUUGUUUGCCUUGUCUUGGCGACCAUCCUCCUGGUCGCCGGCUCC---UCAGCUGCCACAUAUGAUCCUGUGGCGGCGCAACUUCU ......(((..(((.......((...(((.......((((((((......)))))))))))...---.))(((((((((........))))))))))))..))). ( -38.61) >DroYak_CAF1 69913 102 - 1 UUUCUCGAAUAUGCGCACAUUUGUUUGCCUCGCCCUGGCGACCAUCCUCCUGGUCGCCGGCUCC---UCAGCAGCCACAUAUGAUCCUGUGGCGGCGCAACUUCU ......(((..(((((.........(((......((((((((((......))))))))))....---...)))((((((........)))))).)))))..))). ( -40.02) >DroAna_CAF1 63964 101 - 1 UUUCCUGAA-AUGCGCACAUUCGUUUGUCUUGCCCUGGCGGCCGUCCUCCUGGUCGCCAGCUCAACUUCGGCGGCUACAUUCGAUCC---GGCCGCUCAACUCCU .........-..((((....(((..(((...(((((((((((((......)))))))))).....(....).))).)))..)))...---.).)))......... ( -32.70) >consensus UUCCUCGAAAAUGCGCACAUUUGUUUGCCUUGCCCUGGCGACCAUCCUCCUGGUCGCCGGCUCA___UCAGCAGCCACAUAUGAUCCUGUGGCGGCGCAACUUCU ......(((..(((((.....((((.....((..((((((((((......))))))))))..)).....))))((((((........)))))).)))))..))). (-34.92 = -35.37 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:30 2006