Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,430,314 – 9,430,409 |
Length | 95 |
Max. P | 0.953516 |
Location | 9,430,314 – 9,430,409 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.30 |
Mean single sequence MFE | -16.43 |
Consensus MFE | -8.78 |
Energy contribution | -9.08 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -2.10 |
Structure conservation index | 0.53 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9430314 95 - 27905053 -----------AAGAAAAAGAAAAGCGAGGCUGCCAACAAUA-GC-------------AAAAUUAACAAUUGUUAAUUUGAAAAUUGCACACAAAUGCGUAAUGCGAAAGUUUUUGCGCU -----------.............((((.((((.......))-))-------------.((((((((....)))))))).....))))........((((((.((....))..)))))). ( -22.10) >DroVir_CAF1 105827 100 - 1 -----------------AAGAAA-ACGGCAA-AGCAACAGGA-AUAAAAACAGAAAAAAAAAUUAACAAUUGUUAAUUUGAAAAUUGCACACAAAUGCGUAAUGUGAAAGUUUUUGCGUC -----------------......-...((((-(((((..(..-.......)........((((((((....)))))))).....)))).((((.........))))......)))))... ( -13.60) >DroPse_CAF1 58091 89 - 1 GAAG-----------------AAAAAGAAACUGGCAACAAGA-AC-------------AAAAUUAACAAUUGUUAAUUUGAAAAUUGCACACAAAUGCGUAAUGCGAAAGUUUUUGCUCU ..((-----------------(...(((((((.((.......-..-------------.((((((((....))))))))....(((((.((....)).)))))))...)))))))..))) ( -15.80) >DroGri_CAF1 104397 87 - 1 -----------------AAGAAA-ACGAGAA-AGUAACAAGA-AC-------------AAAAUUAACAAUUGUUAAUUUGAAAAUUGCACACAAAUGCGUAAUGUGAAAGUUUUUGCGUC -----------------......-.......-.....(((((-((-------------.((((((((....))))))))....(((((.((....)).)))))......))))))).... ( -14.10) >DroWil_CAF1 63813 83 - 1 -----------------AAGAAA------ACUGGCAACAAGAAGG-------------AGAACUCACAAUUGUUAAUUUGAAAAUUGCACACAAAUGCGUAAUGCGAAAGUUUUA-CAAU -----------------...(((------(((...(((((....(-------------(....))....)))))..((((...(((((.((....)).))))).)))))))))).-.... ( -12.80) >DroAna_CAF1 56495 101 - 1 ---AAAAUUAAAU--AAAAGAAAGUCCGGACUGGCAACAAGA-GC-------------AAAAUUAACAAUUGUUAAUUUGAAAAUUGCACACAAAUGCGUAAUGCGAAAGUUUUUGCGCA ---..........--....(..(((....)))..)..(((..-..-------------.((((((((....)))))))).....)))........(((((((.((....))..))))))) ( -20.20) >consensus _________________AAGAAA_ACGAGACUGGCAACAAGA_AC_____________AAAAUUAACAAUUGUUAAUUUGAAAAUUGCACACAAAUGCGUAAUGCGAAAGUUUUUGCGCU ...........................................................((((((((....)))))))).......(((......)))((((.((....))..))))... ( -8.78 = -9.08 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:28 2006