Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,350,007 – 1,350,099 |
Length | 92 |
Max. P | 0.834947 |
Location | 1,350,007 – 1,350,099 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 84.39 |
Mean single sequence MFE | -18.70 |
Consensus MFE | -14.54 |
Energy contribution | -14.77 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.09 |
Mean z-score | -1.58 |
Structure conservation index | 0.78 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1350007 92 + 27905053 UAUCUUAAGGGACGUUUUCUCAAUGUAACUAUGAAUUAUAUUAUCUGUUAGUAAGGGCUAACAUGAACUAAUGAAAUCGCUCCUAAAUAUAG .......(((..((.((((..(((((((.......))))))).(((((((((....))))))).))......)))).))..)))........ ( -18.30) >DroSec_CAF1 14002 85 + 1 UAUCUUAAGGGUCGAUUUCUCAAUGUAACUCUGAGUUGUAUUAUCUGUCAGAAAGGGUUAACAUAAGAUUUAGAAAUCGCUCCUA------- .......(((..((((((((..((((((((((...(((.((.....)))))..)))))).)))).......))))))))..))).------- ( -20.40) >DroSim_CAF1 14025 85 + 1 UAUCUUAAGGGUCGAUUUCUCAAUGUAACUAUGAGUUGUAUUAUCUGUCAGAAAGGGCUAACAUAAGAUUUAGAAAUCGCUCCUA------- .......(((..((((((((.((((((((.....))))))))....(((......))).............))))))))..))).------- ( -17.40) >consensus UAUCUUAAGGGUCGAUUUCUCAAUGUAACUAUGAGUUGUAUUAUCUGUCAGAAAGGGCUAACAUAAGAUUUAGAAAUCGCUCCUA_______ .......(((..(((((((..((((((((.....))))))))...(((.((......)).))).........)))))))..)))........ (-14.54 = -14.77 + 0.23)
Location | 1,350,007 – 1,350,099 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 84.39 |
Mean single sequence MFE | -17.24 |
Consensus MFE | -15.01 |
Energy contribution | -15.23 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.09 |
Mean z-score | -1.80 |
Structure conservation index | 0.87 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1350007 92 - 27905053 CUAUAUUUAGGAGCGAUUUCAUUAGUUCAUGUUAGCCCUUACUAACAGAUAAUAUAAUUCAUAGUUACAUUGAGAAAACGUCCCUUAAGAUA ...((((((((..((.((((......((.((((((......))))))))((((.((((.....)))).)))).)))).))..)))..))))) ( -16.30) >DroSec_CAF1 14002 85 - 1 -------UAGGAGCGAUUUCUAAAUCUUAUGUUAACCCUUUCUGACAGAUAAUACAACUCAGAGUUACAUUGAGAAAUCGACCCUUAAGAUA -------.(((..((((((((.......((((.(((....(((((.............))))))))))))..))))))))..)))....... ( -17.42) >DroSim_CAF1 14025 85 - 1 -------UAGGAGCGAUUUCUAAAUCUUAUGUUAGCCCUUUCUGACAGAUAAUACAACUCAUAGUUACAUUGAGAAAUCGACCCUUAAGAUA -------.(((..((((((((........((((((......))))))..((((..(((.....)))..))))))))))))..)))....... ( -18.00) >consensus _______UAGGAGCGAUUUCUAAAUCUUAUGUUAGCCCUUUCUGACAGAUAAUACAACUCAUAGUUACAUUGAGAAAUCGACCCUUAAGAUA ........(((..(((((((.........((((((......))))))..((((..(((.....)))..)))).)))))))..)))....... (-15.01 = -15.23 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:58 2006