Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,425,108 – 9,425,207 |
Length | 99 |
Max. P | 0.612972 |
Location | 9,425,108 – 9,425,207 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 71.41 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -10.56 |
Energy contribution | -11.00 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.82 |
Structure conservation index | 0.50 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612972 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9425108 99 + 27905053 AUAGAAAGACACCCA--------------AUUUUAAGUCAUGAGCCUCAUGAGAAAAGAAUGUAGAAAAUGCUGGCGACAGUGUUGUCCCAAAAAA---AGGUGUGUUAAUGGGAA .......(((((((.--------------........(((((.....)))))............((.(((((((....))))))).))........---.)).)))))........ ( -21.80) >DroSec_CAF1 54816 96 + 1 AUAGAAAGACCCCCA--------------AUUUUAAGUCAUGAUGAGGCUGAGAAAAAU-AGUGGAAAAUGCUGGCGACAGUGUUGUCAAAAAA-----AGCUGGGUUAAUGGGAA .......((((((((--------------.((((.((((.......))))...))))..-..)))..(((((((....))))))).........-----....)))))........ ( -20.00) >DroSim_CAF1 41237 101 + 1 AUAGAAAGACACCCA--------------AUUUUAAGUCAUGAUGAGGCUGAGAAAAAU-AGUAGAAAAUGCUGGCGACAGUGUUGUCAAAAAAAAACAAGAUGGGUUAAUGGGAA ...........((((--------------...((((.((((..((..((((.......)-))).((.(((((((....))))))).)).........))..)))).)))))))).. ( -21.00) >DroYak_CAF1 56760 103 + 1 AUAGAGAGGUGCCCAAAUACUUACAUUAAAUUUUAAGUCGUGAUGGGGCUGAGAAAAAU-AAUGGAAAAUGAUGGCGACAGUGUUGCCGA------------CUGUUUCCCAAAAA ..........((((..(((((((.(......).))))).))....))))..........-...(((((....(((((((...))))))).------------...)))))...... ( -21.80) >consensus AUAGAAAGACACCCA______________AUUUUAAGUCAUGAUGAGGCUGAGAAAAAU_AGUAGAAAAUGCUGGCGACAGUGUUGUCAAAAAA_____AG_UGGGUUAAUGGGAA .......(((....................((((.((((.......)))).))))............(((((((....))))))))))............................ (-10.56 = -11.00 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:24 2006