Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,424,110 – 9,424,200 |
Length | 90 |
Max. P | 0.768486 |
Location | 9,424,110 – 9,424,200 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 88.59 |
Mean single sequence MFE | -29.23 |
Consensus MFE | -26.63 |
Energy contribution | -26.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.91 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768486 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9424110 90 - 27905053 ------------GGACAC--AGUUACGGACAAACGGUCAGAAUUACGGACACAAGGACCAGCGGACAGUUGGACACUUGGGAAAGCAUUCCGUCCGACUUGUGA ------------...(((--((.....(((.....))).......(((((.((((..(((((.....)))))...))))((((....)))))))))..))))). ( -29.40) >DroSec_CAF1 53862 90 - 1 ------------GGACAC--AGUUACGGACAAACGGUCAGAAUUACGGACACAAGGACCAGCGGACAGUUGGACACUUGGGAAAGCAUUCCGUCCGACUUGUGA ------------...(((--((.....(((.....))).......(((((.((((..(((((.....)))))...))))((((....)))))))))..))))). ( -29.40) >DroEre_CAF1 59949 102 - 1 GGACAGAGUUACGGACAGAG--UUACGGACAAACGGUCAGAAUUACGGACACAAGGACCAGCGGACAGUUGGACACUUGGGAAAGCAUUCCGUCCGACUUGUGA ..((((((((...(((...(--((.......))).)))..)))).(((((.((((..(((((.....)))))...))))((((....)))))))))..)))).. ( -28.90) >consensus ____________GGACAC__AGUUACGGACAAACGGUCAGAAUUACGGACACAAGGACCAGCGGACAGUUGGACACUUGGGAAAGCAUUCCGUCCGACUUGUGA ......................((((((((.....))).......(((((.((((..(((((.....)))))...))))((((....)))))))))...))))) (-26.63 = -26.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:23 2006