Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,419,694 – 9,419,801 |
Length | 107 |
Max. P | 0.730110 |
Location | 9,419,694 – 9,419,801 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.09 |
Mean single sequence MFE | -22.30 |
Consensus MFE | -14.46 |
Energy contribution | -14.52 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.86 |
Structure conservation index | 0.65 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9419694 107 - 27905053 CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA---CAUA----UGUGGUUGUAUGUUCACGCC------GACAUGGGCAAAU ((((.....((((..(((((((((((((.....)))))))......))))))..))))..(((((....(---((((----(......))))))....)))------))..))))..... ( -25.80) >DroPse_CAF1 49727 111 - 1 CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACAGCACAAACAAGCGCA-CAG--CACACACGCC------GACACGGGCACAU (((......((((..(((((((((((((.....)))))))......))))))..))))..(((((.....((........))((.-..)--)......)))------))...)))..... ( -23.00) >DroSec_CAF1 49273 106 - 1 CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA---CAUA----UGUA-UUGUCUGUACACGCC------GACAUGGGCAAAU .........((((..(((((((((((((.....)))))))......))))))..))))....((((((((---....----))).-))))).......(((------......))).... ( -22.60) >DroWil_CAF1 54014 99 - 1 CCCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA---CAUG----CAU--------AUACACAGUGACUAAGACAUGG------ .(((.....((((..(((((((((((((.....)))))))......))))))..))))((((((((....---..))----)..--------.....))))).........)))------ ( -18.91) >DroAna_CAF1 46345 91 - 1 CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA---CA--------------------CACGCC------GACAGGGGCACAU (((......((((..(((((((((((((.....)))))))......))))))..))))..(((((.....---..--------------------...)))------))..)))...... ( -20.50) >DroPer_CAF1 50346 111 - 1 CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACAGCACAAACAAGCGCA-CAG--CACACACGCC------GACACGGGCACAA (((......((((..(((((((((((((.....)))))))......))))))..))))..(((((.....((........))((.-..)--)......)))------))...)))..... ( -23.00) >consensus CUCAACUAUUGUCUUCAUUUUUCUUGCAAAUCAUGCAAGGCAAUCUAAAAUGUUGACACAUUGGCAAACA___CAUA____CGUA___G___AUACACGCC______GACAUGGGCACAU .((((....((((..(((((((((((((.....)))))))......))))))..))))..))))..................................(((............))).... (-14.46 = -14.52 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:22 2006