| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,417,250 – 9,417,348 |
| Length | 98 |
| Max. P | 0.797443 |
| Location | 9,417,250 – 9,417,348 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 81.70 |
| Mean single sequence MFE | -17.53 |
| Consensus MFE | -12.88 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.797443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9417250 98 - 27905053 --CCA-ACC-AAAGAAGGGAACCAGCCAA-AUCAAAUAAAAUACAUUCCUCAACGGUCUUAGUUUCAAUUGCCACUCCACCGGCAGUUGUAAAUUGUUACUCU --...-...-...((..((......))..-.)).....................(((..((((((((((((((........)))))))).))))))..))).. ( -17.50) >DroSec_CAF1 46805 95 - 1 --CCA-ACUGAAAAAAGAGAACCAGCCAA-AUCAAAUAAAAUACAUUCCACCACGGUCUUAGUUUCAAUUGCCACUC---CGGCAGUUGUAAAUUGUUACUU- --...-.......................-........................(((..((((((((((((((....---.)))))))).))))))..))).- ( -15.90) >DroEre_CAF1 48300 91 - 1 --CCA-ACC-A-AAAAGGGAACCAGCCAA-AUCAAAUAAAAUACAUUUCUCCACGGUCUUAGUUUCAAUUGCCACU----CGGCAGUUGUAAAUUGUUCCU-- --...-...-.-....((((((..(((..-........................)))...(((((((((((((...----.)))))))).)))))))))))-- ( -19.07) >DroYak_CAF1 49280 93 - 1 CACCA-ACC-A-AAAAGGGAACCAGCAAA-AUCAAAUAAAAUACAUUGCCCCACGGUCUUAGUUUCAAUUGCCACU----CGGCAGUUGUAAAUUGUUCAU-- .....-...-.-....(((.....((((.-...............)))))))..((...((((((((((((((...----.)))))))).)))))).))..-- ( -18.09) >DroAna_CAF1 43840 92 - 1 --UAAUAGC-A-GCAAAGAAACGAGCAAAAACCAAUUGAAAUAU-UUCAGCCAUAGUCUUAGUUUCAAUUGCCACU----CGGCAGUUGUAAAUGGUUCUA-- --.......-.-..........((((.........(((((....-)))))...........((((((((((((...----.)))))))).)))).))))..-- ( -17.10) >consensus __CCA_ACC_A_AAAAGGGAACCAGCCAA_AUCAAAUAAAAUACAUUCCUCCACGGUCUUAGUUUCAAUUGCCACU____CGGCAGUUGUAAAUUGUUCCU__ ...........................................................((((((((((((((........)))))))).))))))....... (-12.88 = -13.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:20 2006