Locus 3484

Sequence ID 3R_DroMel_CAF1
Location 9,413,360 – 9,413,456
Length 96
Max. P 0.633821
window5602

overview

Window 2

Location 9,413,360 – 9,413,456
Length 96
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 79.45
Mean single sequence MFE -29.26
Consensus MFE -14.16
Energy contribution -14.52
Covariance contribution 0.36
Combinations/Pair 1.19
Mean z-score -2.01
Structure conservation index 0.48
SVM decision value 0.21
SVM RNA-class probability 0.633821
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9413360 96 - 27905053
UAUGCCAUCGGGACUGCCGAAAUGGGUAAAUUGAGGUUGC-CACCCGGGGAACUGGAUCUCUGU---AU-----AUGUAUAUAGAUGGC-AAUACUUAUA--CAU-----AUC
..((((.((((.....))))....))))...(((((((((-((.((((....))))...(((((---((-----....)))))))))))-))).))))..--...-----... ( -30.60)
>DroSec_CAF1 42800 94 - 1
UAUGCCAUCGGGACUGCCGAAAUGGGUAAAUUGAGGUUGC-CACCCGGGGAACUGGAUAUCUGU---AU-----AUGUAUAUAGAUGGC-AAUACUUAU----GU-----AUC
..((((.((((.....))))....))))...(((((((((-(..((((....))))..((((((---((-----....)))))))))))-))).)))).----..-----... ( -31.20)
>DroEre_CAF1 43899 89 - 1
UAUGCCAUCGGGACUGCCGAAAUGGGUAAAUUGAGGUUGCUUACCCGGGGAACUGGAUC--UGU---AU---------AUAUAGAUGGC-UAUACUUAUA----C-----AUC
...(((((((((...(((..(((......)))..)))..)))..((((....))))...--...---..---------.....))))))-..........----.-----... ( -23.00)
>DroYak_CAF1 45052 92 - 1
UAUGCCAUCGGGACUGCCGAAAUGGGUAAAUUGAGGUUGC-CACCCGGGGAACUGGAUC--UGU---AU---------AUAUAGAUGGG-UAUACUUAUAUACCC-----AUC
.......((((.....)))).(((((((...((((..(((-(..((((....))))(((--(((---..---------..)))))).))-))..))))..)))))-----)). ( -32.20)
>DroAna_CAF1 39659 108 - 1
UAUGCCAUCGGGACUCCUGAAAUGGGUAAAUUGAGGUUGC-CACUCUGGGAACUGGAUG--UGCCCCAAGUGCGGAGUAUAUACAUUGUAUACACAGAUA--CACUCCAAGCC
..((((.(((((...)))))....))))......((((((-.(((.((((.((.....)--)..)))))))))(((((.(((...((((....)))))))--.))))).)))) ( -29.30)
>consensus
UAUGCCAUCGGGACUGCCGAAAUGGGUAAAUUGAGGUUGC_CACCCGGGGAACUGGAUC__UGU___AU_______GUAUAUAGAUGGC_UAUACUUAUA__CAC_____AUC
...((((((....(..((..(((......)))..))..).....((((....))))...........................))))))........................ (-14.16 = -14.52 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:19 2006