Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,411,314 – 9,411,425 |
Length | 111 |
Max. P | 0.956529 |
Location | 9,411,314 – 9,411,425 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.22 |
Mean single sequence MFE | -41.05 |
Consensus MFE | -35.52 |
Energy contribution | -35.34 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -2.38 |
Structure conservation index | 0.87 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9411314 111 + 27905053 UUCUGGGGUC--------CUGG-GGUUCUGGGGAAGGUCCUGUGGAUGGAUUGAGAGCAGGAGACACACGUACAAGUGCAGGUCCAUUUAUCUUCUGUCAUUGUGCGAGUGUUUCCGUUU (((..(..((--------....-))..)..)))..(((((.......)))))..((((.((((((((.(((((((..(((((...........)))))..))))))).)))))))))))) ( -40.70) >DroSec_CAF1 40835 112 + 1 UUCUGGGAUC--------CUGGGGGUUCUGGUGAAGGUCCUGUGGAUGGAUUGAGAGCAGGAGACACACGUACAAGUGCAGGUCCAUUUAUCUUCUGUCAUUGUGCGAGUGUUUCCGUUU ..(..(((((--------(...))))))..)....(((((.......)))))..((((.((((((((.(((((((..(((((...........)))))..))))))).)))))))))))) ( -40.50) >DroEre_CAF1 41895 119 + 1 UUCUAGGGUUCUGCUGUUCUGG-UGUUCUGGGGAAGGUCCUGUGGAUGGAUUGAGAGCAGGAGACACACGUACAAGUGCAGGUCCAUUUAUCUUCUGUCAUUGUGCGAGUGUUUCCGUUU ..((((..(......)..))))-((((((.((....((((...))))...)).))))))((((((((.(((((((..(((((...........)))))..))))))).)))))))).... ( -41.10) >DroYak_CAF1 43020 111 + 1 CUCUAGGGUU--------CUGG-GGUUCUGGGGAAGGUCCUGUGGAUGGAUUGAGAGCAGGAGACACACGUACAAGUGCAGGUCCAUUUAUCUUCUGUCAUUGUGCGAGUGUUUCCGUUU ((((((..((--------....-))..))))))..(((((.......)))))..((((.((((((((.(((((((..(((((...........)))))..))))))).)))))))))))) ( -41.90) >consensus UUCUAGGGUC________CUGG_GGUUCUGGGGAAGGUCCUGUGGAUGGAUUGAGAGCAGGAGACACACGUACAAGUGCAGGUCCAUUUAUCUUCUGUCAUUGUGCGAGUGUUUCCGUUU ((((((..(...............)..))))))..(((((.......)))))..((((.((((((((.(((((((..(((((...........)))))..))))))).)))))))))))) (-35.52 = -35.34 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:18 2006