Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,409,206 – 9,409,318 |
Length | 112 |
Max. P | 0.508004 |
Location | 9,409,206 – 9,409,318 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -33.32 |
Consensus MFE | -22.41 |
Energy contribution | -23.30 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.12 |
Mean z-score | -1.85 |
Structure conservation index | 0.67 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9409206 112 - 27905053 AACUGGCAGGAUGUCACUGUUGCAA----CUACGUGGCAACAACAAUAAGCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGCC-CAAAAACACCCGAAC ....(((.(((((........((((----(..((((((...........))...((((((((((.....)))))))))).))))..))))))))))..)))-............... ( -32.50) >DroPse_CAF1 40215 102 - 1 AACUGGCAGCAUGUCACUGCUGCAA----CAAACCAGCAACAACAAUAACCAAUGACUUCAAUUUUGUUGAUUGGAGUCGCACAAGCUUGUC---AGGGCCAG--------GCCAAC ..((((((((.((((..(((((...----.....)))))...............((((((((((.....))))))))))).))).)).))))---))(((...--------)))... ( -32.70) >DroSec_CAF1 38774 112 - 1 AACUGGCAGGAUGUCACUGUUGCAA----CUACGUGGCAACAACAAUAAGCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGCC-CAAAAACACUCAAAC ....(((.(((((........((((----(..((((((...........))...((((((((((.....)))))))))).))))..))))))))))..)))-............... ( -32.50) >DroEre_CAF1 39814 116 - 1 AACUGGCAGGAUGUCACUGUUGCAACUACGUACGUGGCAGCAACAAUAACCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGCC-CAAAAGCACCCAAAC ....(((.(((((....((((((..((((....))))..))))))((((((..(((((((((((.....))))))))))).....)))))))))))..)))-............... ( -37.70) >DroYak_CAF1 40901 112 - 1 AACUGGCAGGAUGUCACUGUUGCAA----GUACGUGGCAACAACAAUAACCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGUC-CAAAAACACCCAAAC .(((.((((.(......).)))).)----))....(((.(((((.....((..(((((((((((.....)))))))))))...)).))))).)))(((((.-.......)))))... ( -31.80) >DroPer_CAF1 40684 102 - 1 AACUGGCAGCAUGUCACUGCUGCAA----CAAACCAGCAACAACAAUAACCAAUGACUUCAAUUUUGUUGAUUGGAGUCGCACAAGCUUGUC---AGGGCCAG--------GCCAAC ..((((((((.((((..(((((...----.....)))))...............((((((((((.....))))))))))).))).)).))))---))(((...--------)))... ( -32.70) >consensus AACUGGCAGGAUGUCACUGUUGCAA____CUACGUGGCAACAACAAUAACCAAUGGCUUCAAUUUGGUUGAUUGGAGUCGCACGGGGUUGUCGUCUGGGCC_CAAAAACACCCAAAC ....(((..((((.((.((((((.............))))))............((((((((((.....)))))))))).........)).))))...)))................ (-22.41 = -23.30 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:15 2006