Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,349,065 – 1,349,155 |
Length | 90 |
Max. P | 0.551607 |
Location | 1,349,065 – 1,349,155 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 82.41 |
Mean single sequence MFE | -30.95 |
Consensus MFE | -19.48 |
Energy contribution | -20.53 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.86 |
Structure conservation index | 0.63 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1349065 90 - 27905053 AUGUCACAGCGCAGGCGUGGCUCAGCUUUGGUCCAGCUUGG--AAAGCUCCUUCGGGGAGCUUAAAGCACAAAAGUUAAGGAAUUUUCGGAG ..(((((.((....)))))))....(((((((((.((((..--.(((((((.....))))))).))))((....))...)))....)))))) ( -26.60) >DroSec_CAF1 12971 90 - 1 AUGCCACAGCGCAGGCGUGGCUCAGCUUUGGGCCAGCUUGG--AAAGCUCCUUCGGGGAGCUUAAAGCACAAAAGUUAAGGUAUUUUCGGAG (((((..(((.(((((.((((((......))))))))))).--.(((((((.....)))))))...........)))..)))))........ ( -33.60) >DroSim_CAF1 12998 90 - 1 AUGCCACAGCGCAGGCGUGGCUCAGCUUUGGGCCAGCUUGG--AAAGCUCCUUCGGGGAGCUUAAAGCACAAAAGUUAAGGGAUUUUUGGAG ........((.(((((.((((((......))))))))))).--.(((((((.....)))))))...)).((((((((....))))))))... ( -35.20) >DroEre_CAF1 13210 89 - 1 AUGCGACUGCGCAGGCGUGGCUCAGCUUUGGGCCAGCUUGG--AAAGCUCAGUCGGGGAGCUUAAAGCGCAAAAGUUAAGGGAUUUUU-GGG .(.((((((.((((((.((((((......))))))))))..--...)).)))))).)..((.....)).((((((((....)))))))-).. ( -30.90) >DroYak_CAF1 13808 89 - 1 AUGAGACUGCGCAGGCGUGGCUUAGCUUUGCACCAGCUUGG--AAAGCUCACUCGGGGAGCUUAAAGCCCAAAAGUUAGGGAUUUUUA-GGG .((((((..((....))..)(((((((((......((((..--.((((((.(....))))))).))))...)))))))))...)))))-... ( -23.90) >DroAna_CAF1 14717 92 - 1 AUCCGAGGGCGCAGGCGUGGCUCAGCUUUGGGAUAACUUCAAAAAAGCUCCGCCCGAACGCUUAAAGCUCAAAAGCUGCGCCAAAAAAGGAG .(((...((((((((((((((..((((((..((.....))...))))))..)))...))))))..((((....)))))))))......))). ( -35.50) >consensus AUGCCACAGCGCAGGCGUGGCUCAGCUUUGGGCCAGCUUGG__AAAGCUCCUUCGGGGAGCUUAAAGCACAAAAGUUAAGGAAUUUUAGGAG ........((.(((((.((((((......)))))))))))....((((((.......))))))...))........................ (-19.48 = -20.53 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:57 2006