Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,408,373 – 9,408,480 |
Length | 107 |
Max. P | 0.973936 |
Location | 9,408,373 – 9,408,480 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.27 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -14.30 |
Energy contribution | -16.12 |
Covariance contribution | 1.82 |
Combinations/Pair | 1.05 |
Mean z-score | -2.34 |
Structure conservation index | 0.57 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973936 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9408373 107 + 27905053 AUGUAGAUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGCGG-GAGUGCAAACAUUUGCACGCACGCA .(((.....(((.(((..(((.((((((((.......)).))))))..........))).))).)))....)))....(((.-..((((((....))))))...))). ( -27.50) >DroSec_CAF1 37731 107 + 1 AUGUAGGUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAACCAAAAACAAAACGCGG-GAGUGCAAACAUUUGCACGCACGCA .....(((.(((.(((....)))(((((((.......)).)))))...............))).)))...........(((.-..((((((....))))))...))). ( -27.40) >DroSim_CAF1 39507 107 + 1 AUGUAGAUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGNNN-NNNNNNNNNNNNNNNNNNNNNNNNN .(((.....(((.(((..(((.((((((((.......)).))))))..........))).))).)))....)))........-......................... ( -14.10) >DroEre_CAF1 39031 107 + 1 GAGUAGAUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGCGG-GAGUGCAAACAUUUGCACGCACGCA .........(((.(((..(((.((((((((.......)).))))))..........))).))).)))...........(((.-..((((((....))))))...))). ( -26.80) >DroWil_CAF1 35136 86 + 1 ----UUGGUGCUG---UGGCAGUGGUUUGUUCAAAAUA--------------AAAACCAUCGCGUAGAAAAACA-AACGCGCAGAGUGCAAACAUUUGCACGCACGCA ----...((((((---((((.(((((((..........--------------.))))))).))((......)).-....))))..((((((....))))))))))... ( -25.80) >DroYak_CAF1 40085 107 + 1 AUGUAGAUGGCUAGCUAGUUGGUGGCUUGUUCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGCGG-GAGUGCAAACAUUUGCACGCACGCA .(((.....(((.(((..(((.((((((((.......)).))))))..........))).))).)))....)))....(((.-..((((((....))))))...))). ( -28.30) >consensus AUGUAGAUGGCUAGCUAGUUGGUGGCUUGUCCAAAGUGCAAAGCCGAAAAAGAAAACAAAAGCAAGCAAAAACAAAACGCGG_GAGUGCAAACAUUUGCACGCACGCA .......(((((.((...((((........))))...))..)))))................................(((....((((((....))))))...))). (-14.30 = -16.12 + 1.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:13 2006