Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,406,538 – 9,406,638 |
Length | 100 |
Max. P | 0.644224 |
Location | 9,406,538 – 9,406,638 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -26.33 |
Consensus MFE | -15.84 |
Energy contribution | -16.10 |
Covariance contribution | 0.26 |
Combinations/Pair | 1.09 |
Mean z-score | -2.43 |
Structure conservation index | 0.60 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644224 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9406538 100 + 27905053 UAUUGUGCGAAUCGUGAUGCCAACCUCCGGAGCACCGUAUUUGUAUUGAUAUUGGUAUUGGUAUUGGUAUUGGUAUUGGUAUUGGUAUUGGUAUUGGUAU (((.((((...(((.((........))))).)))).)))...((((..((((..((((..((((..(((....)))..))))..))))..))))..)))) ( -32.70) >DroSec_CAF1 35963 82 + 1 UAUUGUGCGAAUCGUGAUGCCAACCUAUGGAGCACCGUAUUCGUAUUGGUAUUG------------GUAUUGGCAAUGGUAUUGGU------AUUGGUAU ......((((((((((...(((.....)))..)).)).))))))((..((((..------------(((((......)))))..))------))..)).. ( -22.80) >DroSim_CAF1 37729 88 + 1 UAUUGUGCGAAUCGUGAUGCCAACCUCCGGAGCACCGUAUUCGUAUUGGUAUUG------------GUAUUGGCAAUGGUAUUGGUAUUGGUAUUGGUAU ....((((...(((.((........))))).)))).((((..((((..((((..------------(((((......)))))..))))..))))..)))) ( -23.50) >consensus UAUUGUGCGAAUCGUGAUGCCAACCUCCGGAGCACCGUAUUCGUAUUGGUAUUG____________GUAUUGGCAAUGGUAUUGGUAUUGGUAUUGGUAU ((((((((((((((((...((.......))..)).)).)))))))(..((((..(((....)))..))))..))))))((((..(((....)))..)))) (-15.84 = -16.10 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:12 2006