| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,378,484 – 9,378,593 |
| Length | 109 |
| Max. P | 0.813528 |
| Location | 9,378,484 – 9,378,593 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.50 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -20.16 |
| Energy contribution | -19.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.813528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9378484 109 + 27905053 UU-A-UUUUG------UUAUUUUGUCGCAAAUGUCCCUCAUUAUUGCGUGAUAUUUAUUUAGGUUAUGACUUAAGUUGUGUCACGUUCGUCUA-AAUUUAUAUCCAAUA--UGUUGACUA ..-.-.....------.......((((((((((.....))))...(((((((((..((((((((....)))))))).))))))))).......-...............--)).)))).. ( -21.00) >DroVir_CAF1 64033 111 + 1 UUUAUAUUUG------UGAUUUUGUCGCAAAUGUGUCUCAUUAUUGCGUGAUAUUUAUUUAGGUUAUGACUUAAGUUGUGUCACGUUCGCCUG-AAUUUAUAUCCAAUA--UGUUGGCCA ..((((((((------((((...))))))))))))..(((.....(((((((((..((((((((....)))))))).))))))))).....))-)........((((..--..))))... ( -30.40) >DroGri_CAF1 63378 111 + 1 UUUCUGUUUC------UGAUUUUGUCGCAAAUGUGUCUCAUUAUUGCGUGAUAUUUAUUUAGGUUAUGACUUAAGUUGUGUCACGUUCGCUUG-AAUUUAUAUCCAAUA--UGUUGGCCA ..........------.......(.(((....))).)(((.....(((((((((..((((((((....)))))))).))))))))).....))-)........((((..--..))))... ( -22.90) >DroSim_CAF1 8121 115 + 1 UU-A-UUUUGUUUCUGUUAUUUUGUCGCAAAUGUCCCUCAUUAUUGCGUGAUAUUUAUUUAGGUUAUGACUUAAGUUGUGUCACGUUCGUCUA-AAUUUAUAUCCAAUA--UGUUGACUA ..-.-..................((((((((((.....))))...(((((((((..((((((((....)))))))).))))))))).......-...............--)).)))).. ( -21.00) >DroWil_CAF1 7081 104 + 1 U--------U------UUAUUUGGUCGCAAAUGUGUCUCAUUAUUGCGUGAUAUUUAUUUAGGUUAUGACUUAAGUUGUGUCACGUUCGUCCAGAAUUUAUAUCCAAUA--UGUUGACUA .--------.------...(((((.((..((((.....))))...(((((((((..((((((((....)))))))).))))))))).)).)))))..............--......... ( -23.90) >DroMoj_CAF1 71503 113 + 1 CUUCUGCUUC------UGAUUUUCUCGCAAAUGUGUCUCAUUAUUGCGUGAUAUUUAUUUAGGUUAUGACUUAAGUUGUGUCACGUUCGCCUG-AAUUUAUAUCCAAUAUAUGCUGGCCA ....(((...------..........)))((((.....))))...(((((((((..((((((((....)))))))).)))))))))..(((.(-....(((((...)))))..).))).. ( -21.62) >consensus UU_A_GUUUG______UGAUUUUGUCGCAAAUGUGUCUCAUUAUUGCGUGAUAUUUAUUUAGGUUAUGACUUAAGUUGUGUCACGUUCGCCUA_AAUUUAUAUCCAAUA__UGUUGACCA .......................((((((((((.....))))...(((((((((..((((((((....)))))))).))))))))).........................))).))).. (-20.16 = -19.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:01 2006