Locus 3472

Sequence ID 3R_DroMel_CAF1
Location 9,378,274 – 9,378,368
Length 94
Max. P 0.552041
window5583

overview

Window 3

Location 9,378,274 – 9,378,368
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -16.58
Consensus MFE -12.29
Energy contribution -12.48
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.12
Structure conservation index 0.74
SVM decision value 0.04
SVM RNA-class probability 0.552041
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9378274 94 - 27905053
UAUUUUAUUGGUUAUUGCAUUUUAAACCGAAAAAAAAACCAAACCGAAAAUACUCCACGGAACACGCACACUGCUGCCGUUUGCUACGUGCGUC
..((((.((((((...........)))))).))))........(((...........)))...((((((...((........))...)))))). ( -17.10)
>DroSec_CAF1 7903 78 - 1
UAUUUUAUUGGUUAUUGCAUUUUAAACCAAAAAAACAA--------------CGCCACGG-ACACGCACACUGCUGCCGU-UGCUACGUGCGUC
..((((.((((((...........)))))).))))...--------------.((.((((-.((.((.....))))))))-.)).......... ( -15.90)
>DroSim_CAF1 7958 78 - 1
UAUUUUAUUGGUUAUUGCAUUUUAAACCAAAAAAAUAA--------------CGCCACGG-ACACGCACACUGCUGCCGU-UGCUACGUGCGUC
((((((.((((((...........)))))).)))))).--------------.((.((((-.((.((.....))))))))-.)).......... ( -18.30)
>DroEre_CAF1 8703 85 - 1
UAUUUUAUUGGUUAUUGCAUUUUAAACCAAAAAAC--------ACAAAAAUACUCCAUGGACCACGCACAUUGGUGCCGC-UGCUACGUGCGUC
.......((((((...........)))))).....--------....................((((((..((((.....-.)))).)))))). ( -14.00)
>DroYak_CAF1 8180 93 - 1
UAUUUUAUUGGUUAUUGCAUUUUAAACCAAAAAAACCAAAAAACCAAAAAUACUCCACGGGCCACGCACACUGGUGCCGU-UGCUACGUGCGUC
..((((.((((((...........)))))).))))....................(((((((.((((((....))).)))-.))).)))).... ( -18.40)
>DroAna_CAF1 7665 72 - 1
UAUUUUAUUGGUUAUUGCAUUUUAAACCAAAAA-------------------CUCAGCAGGCCACGCACA--GCGGCCGU-UGCUACGUGCGUC
.......((((((...........))))))..(-------------------(..((((((((.(.....--).))))..-))))..))..... ( -15.80)
>consensus
UAUUUUAUUGGUUAUUGCAUUUUAAACCAAAAAAA_AA______________CUCCACGG_ACACGCACACUGCUGCCGU_UGCUACGUGCGUC
.......((((((...........)))))).................................((((((...((........))...)))))). (-12.29 = -12.48 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:00 2006