Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,345,535 – 1,345,626 |
Length | 91 |
Max. P | 0.697635 |
Location | 1,345,535 – 1,345,626 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 69.17 |
Mean single sequence MFE | -27.96 |
Consensus MFE | -11.98 |
Energy contribution | -12.58 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.43 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1345535 91 + 27905053 AGCUGAAUUGAGCAGCUGGUGGGGA----UUUUGUGGAAGGGGGGGCGGUAAAGUG--GCC-GGGGUUGGCGCCUGGGA--GCGCCAGCAAUUAACAUAA (((((.......))))).(((..((----((...............((((......--)))-)..((((((((......--))))))))))))..))).. ( -28.80) >DroSec_CAF1 9484 91 + 1 ACCUGAAUUGAGCAGCUGGUGGGGA----UUUGGCGGCAGGGGGGGCAAAAAAGUG--GGC-GGGGUUGGCGCCUGGGA--GCGCCAGCAAUUAACAUAA .((((......((.((..(......----.)..)).)).......((......)).--..)-)))((((((((......--))))))))........... ( -26.50) >DroSim_CAF1 9457 91 + 1 AACUGAAUUGAGCAGAUGGCGGGGA----UUUUGCGGCAGGG-GGGCAGAAAAGUG--GGGGGGGGUUGGCGCCUGGGA--GCGCCAGCAAUUAACAUAA ..(((..(((.(((((.........----.)))))..)))..-...)))....(((--..((...((((((((......--))))))))..))..))).. ( -25.80) >DroEre_CAF1 9875 75 + 1 AGCUGAAUGGAGCAGCUGGUGGGCA----------------AGGGGUAGAAAAGUG--GGC-GGCGAUGGCCC----AG--GCGCCAGCAAUUAACAUAA .(((......))).(((((((.((.----------------....)).......((--(((-.......))))----).--.)))))))........... ( -23.50) >DroAna_CAF1 10276 94 + 1 UGCGAAA---ACCAUCUGCUUUGGGAGGAGUUCUCACAAG-C-GGAUAAAAGGAUGGCGCC-GAGGAUGGCGCCGAGGAUGGCGCCACCAAUUAACAUAA .(((..(---.((((((((((((((((...)))))).)))-)-))))....)).)..))).-..((.(((((((......)))))))))........... ( -35.20) >consensus AGCUGAAUUGAGCAGCUGGUGGGGA____UUUUGCGGAAGGGGGGGCAGAAAAGUG__GGC_GGGGUUGGCGCCUGGGA__GCGCCAGCAAUUAACAUAA .................................................................((((((((........))))))))........... (-11.98 = -12.58 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:56 2006