Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,367,502 – 9,367,597 |
Length | 95 |
Max. P | 0.897659 |
Location | 9,367,502 – 9,367,597 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 88.70 |
Mean single sequence MFE | -27.07 |
Consensus MFE | -23.17 |
Energy contribution | -23.32 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.21 |
Mean z-score | -2.17 |
Structure conservation index | 0.86 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9367502 95 - 27905053 UGCCUGCGAACUGAAAGGCAUCCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAG--AGCAGUGAAUGUGA---GC--U ((((.((...(((..((.(((........))).))..))).))))))....(((...(((((((((.((((......)--.)))))))))))))---))--. ( -27.50) >DroSec_CAF1 136825 95 - 1 GGCCUGCGAACUGAAAGGCAGCCAAAAAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAG--ACCAGUGAAUGUGA---GU--U .((((((...((....))((((((......)))))))))).))(((.....)))...(((((((((.((.........--..))))))))))).---..--. ( -25.50) >DroSim_CAF1 145933 95 - 1 UGCCUGCGAACUGAAAGGCAGCCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAG--AGCAGUGAAUGUGA---GU--U .((((((...((....))((((((......)))))))))).))(((.....)))...(((((((((.((((......)--.)))))))))))).---..--. ( -30.20) >DroEre_CAF1 137534 95 - 1 UGCCUGCGAACUGAAAGGCAGCCACACAAAUGGCUGGUAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUAAG--AGCAGUGAAUGUGA---GC--A ((((.((...((....))((((((......)))))).....))))))...((((...(((((((((.((((......)--.)))))))))))))---))--) ( -29.90) >DroYak_CAF1 137979 97 - 1 UGCCUGCGAACUGAAAGGCAGCCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAGAAAGCGGUGAAUGUGA---GC--U (((((((...((....))((((((......)))))))))....))))....(((...(((((((((.(((...........)))))))))))))---))--. ( -28.70) >DroAna_CAF1 132196 97 - 1 AGCCUGCGAAAUGAAAGGCGAGCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUAU--AGUGAG--AGUGGUUAG-GUGGAUAGUUGU .((((..........))))..((((.....((.(((((((((..(....)..)))).(((.(((((....--.)))))--.))))))))-.)).....)))) ( -20.60) >consensus UGCCUGCGAACUGAAAGGCAGCCAAACAAAUGGCUGGCAGAGUGGCAAAUUGCUUUACAUAUUUACAUGCCAAAUGAG__AGCAGUGAAUGUGA___GC__U .((((((...((....))((((((......)))))))))).))(((.....)))...(((((((((.(((...........))))))))))))......... (-23.17 = -23.32 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:44 2006