Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,361,764 – 9,361,876 |
Length | 112 |
Max. P | 0.950676 |
Location | 9,361,764 – 9,361,876 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -22.12 |
Consensus MFE | -15.09 |
Energy contribution | -15.37 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -2.16 |
Structure conservation index | 0.68 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9361764 112 + 27905053 CCCUACAUUUUUG-GCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAA-ACAGGAACACACACACACACAUG------CAUAACCUUAGUUGCCCACAC .(((..(((((((-.(((((....))))).)).))))).................((((....))))..-..))).................(------((..........)))...... ( -19.80) >DroPse_CAF1 126633 101 + 1 UCGUACAUUUUUGGGCGGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAGCUCCACAA-AAAAGGAAACC----CACACACGCCCACAUAUGACU-------------- ..((.(((...((((((.((((...))))((((..........))))........((((...(((....-....)))...)----)))...))))))...))))).-------------- ( -29.60) >DroSec_CAF1 131174 107 + 1 CCCAACAUUUUUG-UCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACA--ACAAGAACACA----CACACAUG------CAUAACCUUAGAUGCCCACAC .......((((((-((((((....)))))((((..........))))........((((....)))).--)))))))....----.......(------(((........))))...... ( -21.60) >DroSim_CAF1 140210 108 + 1 CCCUACAUUUUUG-GCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAA-ACAAGAACACA----CACACAUG------CAUAACCUUAGAUGCCCACAC .......((((((-.(((((....)))))((((..........))))........((((....))))..-.))))))....----.......(------(((........))))...... ( -21.40) >DroYak_CAF1 132033 104 + 1 CCCAACAUUUUUG-GCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAA-ACAGGAACCCA----CACA----------CACAAACUUAGAUGCCCACAC .....(((((..(-.(((((....)))))((((..........))))........((((...((.....-...))...)))----)...----------......)..)))))....... ( -20.50) >DroAna_CAF1 126522 87 + 1 UCCUACAAUUUUG-GCGGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAAAACAGGAACACA----C----------------------------CCAUAC ((((...((((((-.((.((((...)))).)))))))).................((((....)))).....)))).....----.----------------------------...... ( -19.80) >consensus CCCUACAUUUUUG_GCUGCUGCCAAGCAGGCGUAAAAUAAUAAACGCGAAAUAAAGUGGAAGCCCACAA_ACAAGAACACA____CACACAUG______CAUAACCUUAGAUGCCCACAC .......((((((..(((((....)))))((((..........))))........((((....))))....))))))........................................... (-15.09 = -15.37 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:35 2006