Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,358,916 – 9,359,013 |
Length | 97 |
Max. P | 0.999010 |
Location | 9,358,916 – 9,359,013 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 94.76 |
Mean single sequence MFE | -22.20 |
Consensus MFE | -18.22 |
Energy contribution | -18.66 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.81 |
Structure conservation index | 0.82 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9358916 97 + 27905053 AG-GAAUAAAGCCACCGACAAACGAUGCAUAAAUAAAUAAUACCUACAAACGUGCGUCUC-CGGAAUCCGGGAAAAAAACCGGACUCAUGUACUCAUGG----- .(-(.......)).(((......(((((((.....................)))))))..-)))..(((((........)))))..((((....)))).----- ( -19.80) >DroSec_CAF1 128600 96 + 1 AG-GAAUAAAGCCGCCGACAAACGAUGCAUAAAUAAAUAAUACCUACAAACGUGCGUCUC-CGGAAUCCGGGAAA-AACCCGGACUCAUGUACUCAUAG----- .(-(.......))....(((...(((((((.....................)))))))..-..((.((((((...-..)))))).)).)))........----- ( -20.70) >DroSim_CAF1 137454 103 + 1 AGGGAAUAAAGCCGCCGACAAACGAUGCAUAAAUAAAUAAUACCUACAAACGUGCGUCUCCCGGAAUCCGGGAAA-AACCCAGACUCAUGUACUCAUGGAAUCA .(((...................(((((((.....................)))))))((((((...))))))..-..))).((.(((((....)))))..)). ( -24.70) >DroEre_CAF1 128879 96 + 1 AG-GAAUAAAGCCGCCGACAAACGAUGCAUAAAUAAAUAAUACCUACAAACGUGCGUCUC-CGGAAUCCGGGAAA-AACCCGGACUCAUGUACUCGUGG----- ..-........((((..(((...(((((((.....................)))))))..-..((.((((((...-..)))))).)).)))....))))----- ( -24.30) >DroYak_CAF1 129129 96 + 1 AG-GAAUAAAGCCGCCGACAAACGAUGCAUAAAUAAAUAAUACCUACAAACGUGCGUCUC-CGGAAUCCGGGAAA-AACCCGGACUCAUGUACUCAUGG----- .(-(.......)).(((......(((((((.....................)))))))..-)))..((((((...-..))))))..((((....)))).----- ( -21.50) >consensus AG_GAAUAAAGCCGCCGACAAACGAUGCAUAAAUAAAUAAUACCUACAAACGUGCGUCUC_CGGAAUCCGGGAAA_AACCCGGACUCAUGUACUCAUGG_____ ..............(((......(((((((.....................)))))))...)))..((((((......))))))..((((....))))...... (-18.22 = -18.66 + 0.44)
Location | 9,358,916 – 9,359,013 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 94.76 |
Mean single sequence MFE | -28.98 |
Consensus MFE | -27.34 |
Energy contribution | -27.22 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.01 |
Structure conservation index | 0.94 |
SVM decision value | 3.33 |
SVM RNA-class probability | 0.999010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9358916 97 - 27905053 -----CCAUGAGUACAUGAGUCCGGUUUUUUUCCCGGAUUCCG-GAGACGCACGUUUGUAGGUAUUAUUUAUUUAUGCAUCGUUUGUCGGUGGCUUUAUUC-CU -----((((........((((((((........))))))))..-..((((.(((..((((((((.....))))))))...))).)))).))))........-.. ( -25.40) >DroSec_CAF1 128600 96 - 1 -----CUAUGAGUACAUGAGUCCGGGUU-UUUCCCGGAUUCCG-GAGACGCACGUUUGUAGGUAUUAUUUAUUUAUGCAUCGUUUGUCGGCGGCUUUAUUC-CU -----....(((((...(((((((((..-...)))))))))((-..((((.(((..((((((((.....))))))))...))).))))..))....)))))-.. ( -30.20) >DroSim_CAF1 137454 103 - 1 UGAUUCCAUGAGUACAUGAGUCUGGGUU-UUUCCCGGAUUCCGGGAGACGCACGUUUGUAGGUAUUAUUUAUUUAUGCAUCGUUUGUCGGCGGCUUUAUUCCCU .(((((.(((....)))))))).(((..-..((((((...))))))((((.(((..((((((((.....))))))))...))).))))............))). ( -28.60) >DroEre_CAF1 128879 96 - 1 -----CCACGAGUACAUGAGUCCGGGUU-UUUCCCGGAUUCCG-GAGACGCACGUUUGUAGGUAUUAUUUAUUUAUGCAUCGUUUGUCGGCGGCUUUAUUC-CU -----....(((((...(((((((((..-...)))))))))((-..((((.(((..((((((((.....))))))))...))).))))..))....)))))-.. ( -30.50) >DroYak_CAF1 129129 96 - 1 -----CCAUGAGUACAUGAGUCCGGGUU-UUUCCCGGAUUCCG-GAGACGCACGUUUGUAGGUAUUAUUUAUUUAUGCAUCGUUUGUCGGCGGCUUUAUUC-CU -----....(((((...(((((((((..-...)))))))))((-..((((.(((..((((((((.....))))))))...))).))))..))....)))))-.. ( -30.20) >consensus _____CCAUGAGUACAUGAGUCCGGGUU_UUUCCCGGAUUCCG_GAGACGCACGUUUGUAGGUAUUAUUUAUUUAUGCAUCGUUUGUCGGCGGCUUUAUUC_CU .........((((....(((((((((......)))))))))((...((((.(((..((((((((.....))))))))...))).))))..))))))........ (-27.34 = -27.22 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:31 2006