Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,357,972 – 9,358,065 |
Length | 93 |
Max. P | 0.956191 |
Location | 9,357,972 – 9,358,065 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.12 |
Mean single sequence MFE | -22.57 |
Consensus MFE | -15.79 |
Energy contribution | -15.65 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.05 |
Mean z-score | -2.11 |
Structure conservation index | 0.70 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956191 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9357972 93 + 27905053 ------------------------GAUC--CCAAUUCCUCUGCUAGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA ------------------------....--.....(((...((.((((.((((((((.....)))))))).))))..)).-..))).........(((((.(((......))).))))). ( -21.40) >DroPse_CAF1 122619 116 + 1 GGCGCCAGCAUUCGGCAUUCGGCAGA-C--CCCAUCUCUGGCCUUGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA ((((((.......)))...(((.(((-.--....)))))))))..(((.((((((((.....)))))))).)))......-..............(((((.(((......))).))))). ( -27.20) >DroWil_CAF1 125693 83 + 1 -------------------------------UAAC------CCCAGCCUAAACGUAAGCUCAUUACGUUUUGGCUUUGUUUUUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA -------------------------------....------...((((.((((((((.....)))))))).))))....................(((((.(((......))).))))). ( -16.20) >DroYak_CAF1 128151 93 + 1 ------------------------GAUC--CCAAUUCCUCUGCUAGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA ------------------------....--.....(((...((.((((.((((((((.....)))))))).))))..)).-..))).........(((((.(((......))).))))). ( -21.40) >DroAna_CAF1 122531 90 + 1 ------------------------GAACCUCCAACC-----CCUUGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGAUUAUUUUCACUUAAAA ------------------------.....(((((..-----(...(((.((((((((.....)))))))).)))...)..-))))).........(((((.(((......))).))))). ( -22.00) >DroPer_CAF1 128160 116 + 1 GGCGCCAGCAUUCGGCAUUCGGCAGA-C--CCCAUCUCUGGCCUUGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU-UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA ((((((.......)))...(((.(((-.--....)))))))))..(((.((((((((.....)))))))).)))......-..............(((((.(((......))).))))). ( -27.20) >consensus ________________________GA_C__CCAAUC_CU__CCUAGCCUAAGCGUAAGCUCAUUACGUUUUGGCUUUGUU_UUGGACUAAUUAAAUUUGAAUGACUAUUUUCACUUAAAA .............................................(((.((((((((.....)))))))).))).....................(((((.(((......))).))))). (-15.79 = -15.65 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:30 2006