Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,355,627 – 9,355,728 |
Length | 101 |
Max. P | 0.524154 |
Location | 9,355,627 – 9,355,728 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 90.54 |
Mean single sequence MFE | -24.34 |
Consensus MFE | -18.34 |
Energy contribution | -19.34 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 0.75 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9355627 101 + 27905053 CA----------GUACAGUUCCGCCGGAUUCAAAUCCCCCGGAUUCAGAUCAGCCC-UCUCUGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ..----------.....(((..((((((....(((((...))))).(((.(((...-...)))))).........)))....((((((....)))))).....))).))).. ( -22.20) >DroSec_CAF1 125312 102 + 1 CA----------GUAUGGUUCCGACGGACUCAAAUCCCCCGGAUUCAGAUCAGCCUGUCUCUGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ..----------((.(((((..((((((....(((((...)))))(((......)))..)))))).................((((((....)))))).....))))))).. ( -23.80) >DroSim_CAF1 134172 102 + 1 CA----------GUAUGGUUCCGACGGACUCAAAUCCCCCGGAUUCACAUCAGCCUGUCUCUGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ..----------((.(((((..((((((..(((((((...)))))..........))..)))))).................((((((....)))))).....))))))).. ( -22.80) >DroEre_CAF1 125596 101 + 1 CA----------GUAUGGUUCCGCCGGAUUCAAAUCCCCCGGAUUCAGAUGAGCCC-UCUCAGUCCAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ..----------((.((((((((..((((....))))..))))....((((..(..-.....)..)))).............((((((....))))))......)))))).. ( -25.80) >DroYak_CAF1 125776 111 + 1 CAGUAUGUUUCAGUAUGGUUCCGCCGGAUUCAAAUCCCCGGGACUCAGAUGAGCCC-UCUCAGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA .....(((((((...((((((((..((((....)))).)))))).))..)))(((.-.....((.....))...........((((((....)))))).....))).)))). ( -27.10) >consensus CA__________GUAUGGUUCCGCCGGAUUCAAAUCCCCCGGAUUCAGAUCAGCCC_UCUCUGUCUAUCACAAUUUCCAUCAGUGUGCAUCAGCGCACCCAAAGGCCAACAA ...............(((.((((..((((....))))..)))).))).....(((.......((.....))...........((((((....)))))).....)))...... (-18.34 = -19.34 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:28 2006