Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,354,144 – 9,354,235 |
Length | 91 |
Max. P | 0.907242 |
Location | 9,354,144 – 9,354,235 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 90.74 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -23.65 |
Energy contribution | -24.15 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.04 |
Mean z-score | -1.85 |
Structure conservation index | 0.89 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9354144 91 - 27905053 AACUGGAUAAGUUGGCAUUAGAGGGGCUUUGGCCUGAAUUGCAAUCGCCUUUUGGCCGCUAACGGAAAUAUUUAUUCCACCUUAUCCCAUA-------- ....((((((((((((.......((((....))))...........(((....))).))))))((((.......))))...))))))....-------- ( -27.30) >DroSec_CAF1 123829 98 - 1 AACUGCAUAAGUUGGCAUUAGUGGGGCU-UGGCCUGAAUUUCAAUCGCCUUUUGGCCUCUAACGGAAAUAUUUAUUCCACCUUAUCCCAUAAGUAUCUG ((((.....))))(..(((.((((((..-.((..............(((....))).......((((.......)))).))...)))))).)))..).. ( -19.70) >DroEre_CAF1 124130 99 - 1 AACUGGAUAAGUUGGCAUUAUAGGAGCUUUGGCCUGAAUUGCAAUCGCCUUUGGGCCGCCAACGGAAAUAUUUAUUCCACCUUAUCCCAUAAGUAUCUG ....((((((((((((.((....)).....((((..((..((....)).))..))))))))))((((.......))))...))))))............ ( -29.10) >DroYak_CAF1 124298 99 - 1 AACUGGAUAAGUUGGCAUUAGAGGGGCUUUGGCCUGAAUCGCAAUCGCCUUUUGGCCGCCAACGGAAAUAUUUAUUCCACCUUAUCCCAUAAGUAUCUG ....((((((((((((....((.((((....))))...))......(((....))).))))))((((.......))))...))))))............ ( -30.30) >consensus AACUGGAUAAGUUGGCAUUAGAGGGGCUUUGGCCUGAAUUGCAAUCGCCUUUUGGCCGCCAACGGAAAUAUUUAUUCCACCUUAUCCCAUAAGUAUCUG ....((((((((((((.......((((....))))...........(((....))).))))))((((.......))))...))))))............ (-23.65 = -24.15 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:27 2006