Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,348,575 – 9,348,671 |
Length | 96 |
Max. P | 0.961238 |
Location | 9,348,575 – 9,348,671 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 86.19 |
Mean single sequence MFE | -32.27 |
Consensus MFE | -24.12 |
Energy contribution | -24.50 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.10 |
Mean z-score | -2.60 |
Structure conservation index | 0.75 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9348575 96 - 27905053 GCUGGGAAAUGGGAGAGCGAAAGCGUCGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGCCGGUGGUGAGG------------CAAACGGUAGCGGUAGC------GGUAG ((((............((....))(((...(..(((((.(....((((......))))..).)))))..)..))------------)...)))).((....))------..... ( -29.70) >DroSec_CAF1 118018 96 - 1 GCUGGGAAAUGGGAGCGCGAAAGCGUCGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGCCGGUGGUGAGG------------CAAACGGUAGCGGUAGC------GGUAG .((.((........((((....))))........)).)).....((((......))))..(((((.((.((..(------------(.....))..)).)).)------)))). ( -32.19) >DroSim_CAF1 129271 96 - 1 GCUGGGAAAUGGGAGCGCGAAAGCGUCGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGCCGGUAGUGAGG------------CAAACGGUAGCGGUAGC------GGUAG .((.((........((((....))))........)).)).....((((......))))..(((((.((.((..(------------(.....))..)).)).)------)))). ( -32.49) >DroYak_CAF1 119338 114 - 1 ACUGGGAAAUGGGAGCGCGAAAGCGUUGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGGCGGUGGCAUGGGCAUGGGCAUGGGCAACGGUAGCGGUAGCGGUAGCAGUAG ((((.........(((((....)))))......((((..(....((((......)))).(((.(.(((.(...).))).).)))...)..)))).((....)).....)))).. ( -34.70) >consensus GCUGGGAAAUGGGAGCGCGAAAGCGUCGGAAAAGCCGGGGAAAAGCGGGAAAAUCCGCGAUGCCGGUGGUGAGG____________CAAACGGUAGCGGUAGC______GGUAG .((.((........((((....))))........)).)).....((((......))))..(((((.((.((...................)).)).)))))............. (-24.12 = -24.50 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:19 2006