Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,347,006 – 9,347,105 |
Length | 99 |
Max. P | 0.649185 |
Location | 9,347,006 – 9,347,105 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.53 |
Mean single sequence MFE | -29.54 |
Consensus MFE | -23.16 |
Energy contribution | -22.88 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.73 |
Structure conservation index | 0.78 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9347006 99 + 27905053 AA-----A------------AGGCGGCACACGGCAAAUUUGCCGGGAGUAAACGCAAGUAUAAUAACAACCGAAAGCAAGUUUUUCGGCUCAACUUG----UUGUUGUUGUGGCAGUAGG ..-----.------------..((.(((..(((((....))))).......((....))(((((((((((((((((.....)))))))......)))----)))))))))).))...... ( -27.70) >DroPse_CAF1 111973 97 + 1 CAGGAGCA------------AGGCGGCACACGGCAAAUUUGCCGGGAGUAAACGCAAGAAUAAUAACAACCGAAAGCAAGUUUUUCGGCUCAAGUUG----UUGUUGCUGCCG------- ........------------.(((((((.(((((((....((((..((....(....)............(....).....))..)))).....)))----))))))))))).------- ( -32.90) >DroEre_CAF1 116692 99 + 1 AA-----A------------AGGCGGCACACGGCAAAUUUGCCGGGAGUAAACGCAAGUAUAAUAACAACCGAAAGCAAGUUUUUCGGCUCAACUUG----UUGUUGUUGUGGCAGUAGG ..-----.------------..((.(((..(((((....))))).......((....))(((((((((((((((((.....)))))))......)))----)))))))))).))...... ( -27.70) >DroYak_CAF1 117685 99 + 1 AA-----A------------AGGCGGCACACGGCAAAUUUGCCGGGAGUAAACGCAAGUAUAAUAACAACCGAAAGCAAGUUUUUCGGCUCAACUUG----UUGUUGUUGUGGCAGUAGG ..-----.------------..((.(((..(((((....))))).......((....))(((((((((((((((((.....)))))))......)))----)))))))))).))...... ( -27.70) >DroAna_CAF1 112568 115 + 1 AA-----AGAGGUGGGUUGUGGGCGGCACACGGCAAAUUUGCCGGGAAUAAACGCAAGAAUAAUAACAACCGAAAGCAAGUUUUUCGGCUCAAGUUGCUUAUAGUUGUUGUAGUUUGAGU ..-----...(((..(((((..(((.....(((((....)))))........)))....)))))....)))(((((.....))))).((((((..(((...........)))..)))))) ( -28.32) >DroPer_CAF1 116705 97 + 1 CAGGAGCC------------AGGCGGCACACGGCAAAUUUGCCGGGAGUAAACGCAAGAAUAAUAACAACCGAAAGCAAGUUUUUCGGCUCAAGUUG----UUGUUGCUGCCG------- ........------------.(((((((.(((((((....((((..((....(....)............(....).....))..)))).....)))----))))))))))).------- ( -32.90) >consensus AA_____A____________AGGCGGCACACGGCAAAUUUGCCGGGAGUAAACGCAAGAAUAAUAACAACCGAAAGCAAGUUUUUCGGCUCAACUUG____UUGUUGUUGUGGCAGUAGG ......................((((((..(((((....))))).(((....(....)...........(((((((.....))))))))))..............))))))......... (-23.16 = -22.88 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:18 2006