Locus 3449

Sequence ID 3R_DroMel_CAF1
Location 9,342,347 – 9,342,443
Length 96
Max. P 0.934791
window5536

overview

Window 6

Location 9,342,347 – 9,342,443
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 78.30
Mean single sequence MFE -25.18
Consensus MFE -15.65
Energy contribution -17.07
Covariance contribution 1.42
Combinations/Pair 1.14
Mean z-score -2.15
Structure conservation index 0.62
SVM decision value 1.24
SVM RNA-class probability 0.934791
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9342347 96 - 27905053
ACCACAGGCAGCGCAGUUUGCUCCUGCAGAUCCUGCAGCUCCCGCUGCUCCUGCAUUUAGUGAAGUAUUGUUUCUGCUAGAUUAAUCCUGUUUUAA
...(((((....(((((((((....)))))....(((((....)))))..))))(((((((((((.....)))).)))))))....)))))..... ( -28.60)
>DroPse_CAF1 110527 75 - 1
ACCACAGGCAGAGCAGCCUGCU---------------------GCUGUUGCUGCAUUUAGUGAAGUAUUGUUUCUGCUAGAUUAAUCCUGUUUUAA
...((((((((((((((.....---------------------)))))).))))(((((((((((.....)))).))))))).....))))..... ( -22.20)
>DroSec_CAF1 114552 96 - 1
ACCACAGGCAGCGCAGUUUGCUCCUGCAGAUCCUGCAGCUCCCGCUGCUCCUGCAUUUAGUGAAGUAUUGUUUCUGCUAGAUUAAUCCUGUUUUAA
...(((((....(((((((((....)))))....(((((....)))))..))))(((((((((((.....)))).)))))))....)))))..... ( -28.60)
>DroSim_CAF1 125772 96 - 1
ACCACAGGCAGCGCAGUUUGCUCCUGCAGAUCCUGCAGCUCCCGCUGCUCCUGCAUUUAGUGAAGUAUUGUUUCUGCUAGAUUAAUCCUGUUUUAA
...(((((....(((((((((....)))))....(((((....)))))..))))(((((((((((.....)))).)))))))....)))))..... ( -28.60)
>DroAna_CAF1 110406 85 - 1
ACCGCAGACGA-GA----------UGCUUGUUCUGGUGGUGGCGCUGCUGGUGCAUUUAGUGAAGUAUUGUUUCUGCUAGAUUAAUCCUGUUUUAA
...((((((((-(.----------..)))))(((((..(..(((.((((..(((.....))).)))).)))..)..)))))......))))..... ( -20.90)
>DroPer_CAF1 115262 75 - 1
ACCACAGGCAGAGCAGCCUGCU---------------------GCUGUUGCUGCAUUUAGUGAAGUAUUGUUUCUGCUAGAUUAAUCCUGUUUUAA
...((((((((((((((.....---------------------)))))).))))(((((((((((.....)))).))))))).....))))..... ( -22.20)
>consensus
ACCACAGGCAGCGCAGUUUGCU__UGCAGAUCCUGCAGCUCCCGCUGCUCCUGCAUUUAGUGAAGUAUUGUUUCUGCUAGAUUAAUCCUGUUUUAA
...((((((((.(((((......(((((.....))))).....)))))..))))(((((((((((.....)))).))))))).....))))..... (-15.65 = -17.07 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:17 2006