Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,339,474 – 9,339,565 |
Length | 91 |
Max. P | 0.793983 |
Location | 9,339,474 – 9,339,565 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 83.42 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -19.30 |
Energy contribution | -19.97 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.15 |
Mean z-score | -2.44 |
Structure conservation index | 0.74 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.793983 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9339474 91 - 27905053 -UUUUUC-GC--CCGCCAAUU--UAUUCGUAGCAUGGCGGCAAUAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA -......-((--(.((((..(--((....)))..)))))))......((((..((((((.......(((((....)))))...))))))..)).)). ( -26.60) >DroPse_CAF1 107695 88 - 1 CUUU--G-GCAUUCGGCAUUGGGCAUU--GGGCAUGGGG----AAAACCCGUACAAGUGAAAAAUCGCCAUGAAAAUGGCAAACGCUUGGCCAUGUA ((..--.-((.....))...))((((.--.((((((((.----....))))).((((((.......(((((....)))))...))))))))))))). ( -28.70) >DroSec_CAF1 111685 92 - 1 -UUUUUCGGC--CGGCCAAUU--UAUUCGUAGCAUGGCGGCACAAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUCGCAAGCGCUUGGCCAUGUA -......(((--((((.....--.........((((((((.......(((.....)))......)))))))).....(....).)).)))))..... ( -25.42) >DroEre_CAF1 111504 89 - 1 -UUU--C-GC--UCGCCAAUU--UAUUCCUAGCAUGGCGUCACAAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA -...--.-..--.........--........(((((((.(((.......))).((((((.......(((((....)))))...))))))))))))). ( -26.00) >DroYak_CAF1 112679 89 - 1 -UUU--C-GC--UCGCCAAUU--UAUUCCUAGCAUGGCAGCACAAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA -...--.-..--.........--........(((((((....((.....))..((((((.......(((((....)))))...))))))))))))). ( -25.30) >DroAna_CAF1 107564 87 - 1 -UUC--G-GC--UUGCCAAUU--UAUUCGGUUCGCAGCAG--CAAAAACUGUACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA -...--(-((--.(((.((((--.....)))).)))((((--......)))).((((((.......(((((....)))))...)))))))))..... ( -24.60) >consensus _UUU__C_GC__UCGCCAAUU__UAUUCGUAGCAUGGCGGCACAAAAACUGAACAAGUGAAAAAUCGCCAUGAAAAUGGCAAGCGCUUGGCCAUGUA ...............................(((((((((........))...((((((.......(((((....)))))...))))))))))))). (-19.30 = -19.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:16 2006