Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,337,101 – 9,337,197 |
Length | 96 |
Max. P | 0.898771 |
Location | 9,337,101 – 9,337,197 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 77.78 |
Mean single sequence MFE | -23.05 |
Consensus MFE | -13.57 |
Energy contribution | -13.90 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.59 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9337101 96 + 27905053 CUGGCCGAAAGGCACCGAGCGUCAAGACAAAUUGUUGCAGCAGCUGCAUGUUGAGCCAAUAAACAAAGCCAAAAGCACAACAGUAGCACAGCAC--CA ((((((....))).....(((.(((......))).)))....(((((.(((((.((..................)).)))))))))).)))...--.. ( -27.07) >DroYak_CAF1 110257 85 + 1 CUGGCCGAAAGGCACCGAGCGUCAAGACAAAUUGUUGCAGCAGCUGCAUGUUGAGCCAAUAAACAAAGCCAAAAGCACAAC-------------AGCA ((((((....))).....(((.(((......))).)))..)))..((.(((((.((..................)).))))-------------))). ( -21.37) >DroAna_CAF1 105357 74 + 1 CUGGCCGAGAGGCA--GGACGGCAAGACAAAUUGUUGCAGCAGCUGCAUGUUAUGCCAAUAAACAAAGCCAAAAGG---------------------- ((.(((....))).--))..((((.((((...(((.((....)).))))))).))))...................---------------------- ( -20.70) >consensus CUGGCCGAAAGGCACCGAGCGUCAAGACAAAUUGUUGCAGCAGCUGCAUGUUGAGCCAAUAAACAAAGCCAAAAGCACAAC_______________CA ...(((....)))..................((((((...((((.....))))...)))))).................................... (-13.57 = -13.90 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:15 2006