Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,334,329 – 9,334,442 |
Length | 113 |
Max. P | 0.788226 |
Location | 9,334,329 – 9,334,442 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.16 |
Mean single sequence MFE | -25.73 |
Consensus MFE | -24.67 |
Energy contribution | -24.00 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.13 |
Mean z-score | -0.95 |
Structure conservation index | 0.96 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788226 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9334329 113 + 27905053 CGACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU-------GUUUGAAUUUGUUGAAGCAUGUUCGAGUG .((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((.........)-------))..))))).))))))))))))))..... ( -26.90) >DroPse_CAF1 102919 120 + 1 CAACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAGUUUUUGCAUAUUUUAUCUGUUUUCUGUUUGAAUUUGUUGAAGCAUGUUCGAGUG .((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((................)))..))))).))))))))))))))..... ( -25.89) >DroWil_CAF1 105214 113 + 1 CAACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU-------GUUUGAAUUUGUUGAAGCAUGUUUGAGUG .((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((.........)-------))..))))).))))))))))))))..... ( -24.30) >DroYak_CAF1 106815 113 + 1 CGACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU-------GUUUGAAUUUGUUGAAGCAUGUUCGAGUG .((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((.........)-------))..))))).))))))))))))))..... ( -26.90) >DroAna_CAF1 102721 113 + 1 CGACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU-------GUUUGAAUUUGUUGAAGCAUGUUCGAGUA .((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((.........)-------))..))))).))))))))))))))..... ( -26.90) >DroPer_CAF1 107685 120 + 1 CAACAUGAGCUUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCUGUUUUCUGUUUGAAUUUGUUGAAGCAUGUUCGAGUG .((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..(((................)))..))))).))))))))))))))..... ( -23.49) >consensus CAACAUGAGCCUUGGUGUCUGGCAAAUUGUUUUCAAGGAACAUGCAAAGCGCAAGUAUUUAAUUAAUUUUUGCAUAUUUUAUCU_______GUUUGAAUUUGUUGAAGCAUGUUCGAGUG .((((...(((.........)))....))))......((((((((...((....)).((((((.(((((..((..................))..))))).))))))))))))))..... (-24.67 = -24.00 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:11 2006