Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,322,073 – 1,322,183 |
Length | 110 |
Max. P | 0.995769 |
Location | 1,322,073 – 1,322,183 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.78 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -18.61 |
Energy contribution | -18.83 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.12 |
Structure conservation index | 0.63 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1322073 110 + 27905053 ACACUUGUGCACCAGGCGUUUCUGGAGAAGAUUUGAUCUUCUGAGCACCAAAUAUAGCAGCCGGCUCUUUGGUUACGAAUUGUAAAUUAGAAGUGCAAUCACAAGUGCAA .((((((((......(((((((((((((((((...)))))))....((((((...(((.....))).)))))).............))))))))))...))))))))... ( -30.70) >DroSec_CAF1 10738 91 + 1 GCACUUGUGCAGCCGCCGUUUCUGGAGGAGAUUUGAUCUGCUGGGCACCAAAAAUAGCAGACAGA-------------------UAUUAGAAUUGCAAUCACAAGUGCGA (((((((((...((.(((....))).))..(((((.(((((((...........)))))))))))-------------------)..............))))))))).. ( -30.30) >DroSim_CAF1 11792 91 + 1 GCACUUGUGCAGCCGCCGUUUCUGGAGGAGAUUUGAUCUGCUGGGCACCAAAAAUAGCAGCCAGA-------------------UAUUAGAAUUGCAAUCACAAGUGCAA (((((((((...((.(((....))).)).(((((.((((((((..............))).))))-------------------)....))))).....))))))))).. ( -27.44) >consensus GCACUUGUGCAGCCGCCGUUUCUGGAGGAGAUUUGAUCUGCUGGGCACCAAAAAUAGCAGCCAGA___________________UAUUAGAAUUGCAAUCACAAGUGCAA ((((((((((((....((..(((.....)))..))..((((((...........))))))................................))))....)))))))).. (-18.61 = -18.83 + 0.22)
Location | 1,322,073 – 1,322,183 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 78.78 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -20.49 |
Energy contribution | -21.27 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.69 |
Structure conservation index | 0.69 |
SVM decision value | 2.61 |
SVM RNA-class probability | 0.995769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1322073 110 - 27905053 UUGCACUUGUGAUUGCACUUCUAAUUUACAAUUCGUAACCAAAGAGCCGGCUGCUAUAUUUGGUGCUCAGAAGAUCAAAUCUUCUCCAGAAACGCCUGGUGCACAAGUGU ..(((((((((...((((.......((((.....)))).((((.(((.....)))...))))))))..(((((((...)))))))((((......))))..))))))))) ( -31.50) >DroSec_CAF1 10738 91 - 1 UCGCACUUGUGAUUGCAAUUCUAAUA-------------------UCUGUCUGCUAUUUUUGGUGCCCAGCAGAUCAAAUCUCCUCCAGAAACGGCGGCUGCACAAGUGC ..(((((((((((((......)))).-------------------...(.((((..(((((((.....((.((((...)))).)))))))))..)))))..))))))))) ( -26.10) >DroSim_CAF1 11792 91 - 1 UUGCACUUGUGAUUGCAAUUCUAAUA-------------------UCUGGCUGCUAUUUUUGGUGCCCAGCAGAUCAAAUCUCCUCCAGAAACGGCGGCUGCACAAGUGC ..(((((((((((((......)))).-------------------...((((((..(((((((.....((.((((...)))).)))))))))..)))))).))))))))) ( -30.90) >consensus UUGCACUUGUGAUUGCAAUUCUAAUA___________________UCUGGCUGCUAUUUUUGGUGCCCAGCAGAUCAAAUCUCCUCCAGAAACGGCGGCUGCACAAGUGC ..(((((((((((((......)))).........................(((((.(((((((.....((.((((...)))).))))))))).)))))...))))))))) (-20.49 = -21.27 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:52 2006